Parental gene:

RPS18, ENSEEUG00000010297

Aliases:None
Description:ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2323:13932..26412(+)


>ENSEEUG00000010297
ATGTCTCTAGTGATTCCTGAGAAGTTCCAGCACATTTTGCGAGTCCTCAACACCAACATCGATGGGCGTCGGAAAATAGC
CTTTGCCATTACTGCAATTAAGGGTGTGGGGCGAAGATACGCTCATGTGGTATTGAGGAAAGCCGACATTGACTTGACCA
AGAGGGCAGGAGAACTCACAGAGGATGAGGTGGAACGTGTGATCACTATTATGCAGAATCCACGCCAGTACAAGATACCT
GACTGGTTTTTGAACAGACAGAAGGATGTGAAGGATGGAAAATACAGTCAGGTCCTGGCTAATGGTTTGGACAACAAGCT
CCGTGAAGATCTGGAGCGGCTTAAGAAGATTCGAGCCCACAGAGGGCTGCGCCACTTCTGGGGACTTCGTGTCCGTGGCC
AACATACCAAGACCACAGGACGCCGTGGCCGCACCGTGGGTGTGTCCAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP017611_liver 299 .53 RPM
SRP017611_kidney 346 .38 RPM
SRP017611_brain 142 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002648 ortholog_one2one 2 retrogenes
retro_btau_1052, retro_btau_614,
Callithrix jacchus ENSCJAG00000021650 ortholog_one2one 5 retrogenes
retro_cjac_22, retro_cjac_245, retro_cjac_2529, retro_cjac_2893, retro_cjac_2955,
Dasypus novemcinctus ENSDNOG00000012084 ortholog_one2one 13 retrogenes
retro_dnov_1295, retro_dnov_1398, retro_dnov_1448, retro_dnov_1675, retro_dnov_1770, retro_dnov_2008, retro_dnov_2115, retro_dnov_2223, retro_dnov_2288, retro_dnov_327, retro_dnov_363, retro_dnov_384, retro_dnov_399,
Homo sapiens ENSG00000231500 ortholog_one2one 2 retrogenes
retro_hsap_1806, retro_hsap_1974,
Gorilla gorilla ENSGGOG00000006571 ortholog_one2one 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Macropus eugenii ENSMEUG00000016770 ortholog_one2one 11 retrogenes
retro_meug_1296, retro_meug_1737, retro_meug_1807, retro_meug_1946, retro_meug_212, retro_meug_310, retro_meug_344, retro_meug_387, retro_meug_566, retro_meug_625, retro_meug_627,
Myotis lucifugus ENSMLUG00000007360 possible_ortholog 2 retrogenes
retro_mluc_181, retro_mluc_932,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Oryctolagus cuniculus ENSOCUG00000010546 possible_ortholog 1 retrogene
retro_ocun_31,
Otolemur garnettii ENSOGAG00000006225 ortholog_one2one 7 retrogenes
retro_ogar_1498, retro_ogar_1832, retro_ogar_2372, retro_ogar_472, retro_ogar_608, retro_ogar_709, retro_ogar_905,
Pongo abelii ENSPPYG00000025953 ortholog_one2one 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 ortholog_one2one 1 retrogene
retro_ptro_121,
Pteropus vampyrus ENSPVAG00000001902 ortholog_one2one 6 retrogenes
retro_pvam_295, retro_pvam_556, retro_pvam_691, retro_pvam_708, retro_pvam_829, retro_pvam_875,
Rattus norvegicus ENSRNOG00000028505 possible_ortholog 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 possible_ortholog 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,
Sus scrofa ENSSSCG00000001502 ortholog_one2one 5 retrogenes
retro_sscr_112, retro_sscr_156, retro_sscr_157, retro_sscr_2, retro_sscr_831,
Tupaia belangeri ENSTBEG00000012708 ortholog_one2one 40 retrogenes
retro_tbel_1070, retro_tbel_1739, retro_tbel_1745, retro_tbel_1806, retro_tbel_1818, retro_tbel_1827, retro_tbel_1855, retro_tbel_205, retro_tbel_2087, retro_tbel_211, retro_tbel_2299, retro_tbel_2309, retro_tbel_2312, retro_tbel_234, retro_tbel_2364, retro_tbel_2424, retro_tbel_2473, retro_tbel_250, retro_tbel_2682, retro_tbel_2768, retro_tbel_295, retro_tbel_3189, retro_tbel_3317, retro_tbel_3383, retro_tbel_3625, retro_tbel_363, retro_tbel_3686, retro_tbel_3731, retro_tbel_3870, retro_tbel_4100, retro_tbel_4215, retro_tbel_4365, retro_tbel_45, retro_tbel_4562, retro_tbel_4578, retro_tbel_462, retro_tbel_57, retro_tbel_578, retro_tbel_856, retro_tbel_941,
Tursiops truncatus ENSTTRG00000004302 ortholog_one2one 3 retrogenes
retro_ttru_1012, retro_ttru_1553, retro_ttru_837,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_201 67.44 84.21
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2. retro_eeur_261 68.18 99.34
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3. retro_eeur_380 68.97 56.58
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4. retro_eeur_460 82.76 94.74
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5. retro_eeur_473 84.31 100.00
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6. retro_eeur_498 52.43 67.11
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7. retro_eeur_667 81.08 72.37
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8. retro_eeur_689 68.59 99.34
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Download FASTA sequences of all ENSEEUG00000010297 retrocopies