RetrogeneDB ID: | retro_tbel_4562 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_90402:4714..5170(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 90.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHILRVLNTNIDGR.K.AFAITAIKGVGRRYAHVV..KAD.DLTK.AGELTEDEVERVITI | |
Retrocopy | MSLVIPEKFQHILRVLNTNIDGRWKTAFAITAIKGVGRRYAHVVREKADMDLTKTAGELTEDEVERVITI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGL.HFWGLRV..Q.TKTTG | |
Retrocopy | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLCHFWGLRV*VQNTKTTG |
Parental | RRGRTVGVSKKK |
..G.TVGV.KKK | |
Retrocopy | HHGHTVGVFKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |