RetrogeneDB ID: | retro_dnov_2008 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_41939:4328..4782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSDNOG00000012084 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSLVIPEK-FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
.SLVIPEK...H.L.VLNTNI.G..KIA.AITA.KGVG.R.AHVVLR.AD.DL...AGEL.EDEVE...T | |
Retrocopy | LSLVIPEK<VPHTLQVLNTNIEGWWKIASAITASKGVGQRCAHVVLRNADTDLPRGAGELPEDEVECATT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGL-RHFWGLRVRGQHTKT |
IM......KIPDWFLNRQKD.K.GKYS.VLAN...NKLREDLERLK.IRAHR.L..H.WGLRV.GQ.TKT | |
Retrocopy | IMRYSCRHKIPDWFLNRQKDFKGGKYSDVLANSQGNKLREDLERLKEIRAHREL<AHSWGLRVPGQYTKT |
Parental | TGRRGRTVGVSKKK |
.G.RG.TVGVSKKK | |
Retrocopy | PGCRGCTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 1233 .12 RPM |
SRP012922_cerebellum | 0 .00 RPM | 490 .76 RPM |
SRP012922_heart | 0 .00 RPM | 542 .95 RPM |
SRP012922_kidney | 0 .00 RPM | 1375 .55 RPM |
SRP012922_liver | 0 .00 RPM | 802 .67 RPM |
SRP012922_lung | 0 .00 RPM | 1687 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 918 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 2480 .37 RPM |