RetrogeneDB ID: | retro_eeur_201 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_207169:3532..3911(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 67.44 % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KIAFAITAIKGVGR-RYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDG |
KIAFA..A.KG.GR.RYAHVVLRKA..DLTKRAGE..EDEV..V.TIMQN..QYKIPDWFLN.QKDV... | |
Retrocopy | KIAFATIAVKGIGR>RYAHVVLRKANTDLTKRAGEFIEDEVGHVSTIMQNLHQYKIPDWFLNGQKDVEGR |
Parental | KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK |
K.......GLDNK..EDLE.LKKI....G..HF.GL.VR..HTK.T.RRGRTVGV..KK | |
Retrocopy | KIQS--GPGLDNKPHEDLE*LKKIQDYKGMSHFGGLCVRDLHTKPTERRGRTVGVLRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |