RetrogeneDB ID: | retro_tbel_462 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2130:226715..227092(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 65.12 % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LRVLNTNIDGRRKIAFAITAIKGVGRRYAHV-VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPD |
.R....NIDGRRK.AFAITA....GRR.AHV.V.RKA...LTKR...LTE.EVERVITIMQNP.QYKIPD | |
Retrocopy | MRGAGSNIDGRRKRAFAITATQSMGRRHAHV<VSRKAGMGLTKRSRVLTEEEVERVITIMQNPHQYKIPD |
Parental | WFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
WFLN.QKDV..GKYSQVLAN.LDNK.R..L.RLKKI.A.R.L.........G....TTG | |
Retrocopy | WFLNKQKDVNSGKYSQVLANSLDNKPRKGLKRLKKICANRRLCQH--TKTKGRRGCTTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |