RetrogeneDB ID: | retro_tbel_4100 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_67185:1265..1719(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 64.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSLVIPEKFQHIL-RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
MSLVIPEKFQ.....VL...I.G..KI.FA.TA.K....RY.HV..RK.DIDLTKRA.EL....V..VIT | |
Retrocopy | MSLVIPEKFQYVF<LVLSPDIYGQQKIDFANTAMKDME*RYSHVMVRKGDIDLTKRAQELSKHKVDHVIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFW-GLRVRGQHTKT |
IMQNP..Y..PDWF.NR.K..KDGKY..VLAN.L..KLRED.ERLKKI.AH.GL.HFW.G..VRGQHTKT | |
Retrocopy | IMQNPC*YMMPDWFSNRKKVLKDGKYI*VLANNLGKKLREDIERLKKIWAHTGLCHFW<GSLVRGQHTKT |
Parental | TGRRGRTVGVSKKK |
T...G.T..VSKKK | |
Retrocopy | TDHHGHTMNVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |