RetrogeneDB ID: | retro_mmul_1883 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:60062746..60063478(+) | ||
Located in intron of: | ENSMMUG00000012355 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2328 | ||
Ensembl ID: | ENSMMUG00000006489 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
Percent Identity: | 93.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
MDKNELVQKAKLAEQAE.YDDMAACMKSVTEQGAELSNEERNLLSVAYKNV.G.RRSSWRVVSSIE..TE | |
Retrocopy | MDKNELVQKAKLAEQAE*YDDMAACMKSVTEQGAELSNEERNLLSVAYKNVIGSRRSSWRVVSSIEL-TE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
GA..KQ.MAREYREKIETELRDICNDVLSLLEKFLIPNAS.AESKVFYLKMKGDYY.YLAEVA.GDDKKG | |
Retrocopy | GA*EKQ*MAREYREKIETELRDICNDVLSLLEKFLIPNAS*AESKVFYLKMKGDYYHYLAEVATGDDKKG |
Parental | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
.VDQSQQAYQEAFEISKKEM.PTHPIRLGLALNFSVFYYEILNSPEKACSLAK.AFDEAIAELDTLSE.S | |
Retrocopy | TVDQSQQAYQEAFEISKKEMEPTHPIRLGLALNFSVFYYEILNSPEKACSLAKSAFDEAIAELDTLSEGS |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
YKDST.IMQLLRDNLTLWTSDTQG.EAEAGEGGEN | |
Retrocopy | YKDSTVIMQLLRDNLTLWTSDTQGGEAEAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 470 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 603 .38 RPM |
SRP007412_cerebellum | 0 .26 RPM | 291 .68 RPM |
SRP007412_heart | 0 .12 RPM | 88 .86 RPM |
SRP007412_kidney | 0 .23 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 31 .79 RPM |
SRP007412_testis | 0 .11 RPM | 133 .55 RPM |