Parental gene: | MMU.2328, ENSMMUG00000006489 |
| Aliases: | None |
| Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 8:103441493..103476402(-) |
>ENSMMUG00000006489
ATGGATAAAAATGAGCTGGTTCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAGTTGCTTATAAAAATGTTGTAGGAG
CCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTGAACAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGA
GAATACAGAGAGAAAATTGAGACGGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCC
CAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGATTACTATCGTTACTTGGCTGAGGTTGCCG
CTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAGGAAATG
CAACCAACACATCCTATCAGACTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCCAGAGAA
AGCCTGCTCTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACAAAGACA
GCACGCTAATAATGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCCAAGGAGACGAAGCTGAAGCAGGA
GAAGGAGGGGAAAATTAA
ATGGATAAAAATGAGCTGGTTCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAGTTGCTTATAAAAATGTTGTAGGAG
CCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTGAACAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGA
GAATACAGAGAGAAAATTGAGACGGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCC
CAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGATTACTATCGTTACTTGGCTGAGGTTGCCG
CTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAGGAAATG
CAACCAACACATCCTATCAGACTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCCAGAGAA
AGCCTGCTCTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACAAAGACA
GCACGCTAATAATGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCCAAGGAGACGAAGCTGAAGCAGGA
GAAGGAGGGGAAAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 603 .38 RPM |
| SRP007412_brain | 470 .05 RPM |
| SRP007412_cerebellum | 291 .68 RPM |
| SRP007412_heart | 88 .86 RPM |
| SRP007412_kidney | 112 .56 RPM |
| SRP007412_liver | 31 .79 RPM |
| SRP007412_testis | 133 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000008694 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000000236 | possible_ortholog | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000000580 | possible_ortholog | 6 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000002798 | ortholog_one2one | 9 retrogenes | |
| Callithrix jacchus | ENSCJAG00000015844 | ortholog_one2one | 5 retrogenes | |
| Cavia porcellus | ENSCPOG00000020285 | ortholog_one2one | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000001672 | possible_ortholog | 10 retrogenes | |
| Ficedula albicollis | ENSFALG00000005860 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000032017 | ortholog_one2one | 4 retrogenes | |
| Gallus gallus | ENSGALG00000010725 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000022133 | ortholog_one2one | 9 retrogenes | |
| Loxodonta africana | ENSLAFG00000004944 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017323 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013206 | within_species_paralog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000022285 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000734 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000018791 | possible_ortholog | 7 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000003703 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000012671 | possible_ortholog | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000006062 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023864 | ortholog_one2one | 3 retrogenes | |
| Taeniopygia guttata | ENSTGUG00000012078 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015906 | ortholog_one2one | 4 retrogenes | |
| Vicugna pacos | ENSVPAG00000005865 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_451 | 85.31 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_1859 | 83.33 | 77.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_1883 | 93.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_2136 | 81.03 | 70.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmul_2247 | 69.94 | 68.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmul_2422 | 87.35 | 99.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmul_2503 | 73.81 | 68.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000006489 retrocopies