RetrogeneDB ID: | retro_mmul_1061 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:53376231..53376956(+) | ||
Located in intron of: | ENSMMUG00000014613 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18051 | ||
Ensembl ID: | ENSMMUG00000013206 | ||
Aliases: | None | ||
Description: | 14-3-3 protein beta/alpha [Source:RefSeq peptide;Acc:NP_001245273] |
Percent Identity: | 80.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MTMDKSELVQKA-KLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ |
MT.DKSELVQKA..L.EQAE..DDMA.AMKAV.EQ.HE.SNEER.....AYKNVVGA..SSWRV...... | |
Retrocopy | MTVDKSELVQKA<QLTEQAECCDDMAVAMKAVREQRHEFSNEER----IAYKNVVGACCSSWRVTPALSR |
Parental | KTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDN |
K..R.EKK.Q.G.EY.EK.EAELQDICNDVLELLDKYL.PN..QPE.KVFYLKMKGDYFRYLSEVASGDN | |
Retrocopy | K-QRKEKKPQVGREYHEKMEAELQDICNDVLELLDKYLTPNSIQPERKVFYLKMKGDYFRYLSEVASGDN |
Parental | KQTTVSNSQQAYQEAFEISKKE-MQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
KQTT..N..QAYQE.FEISKKE..QPTHPI.LGLALNFSVFYYEILNS.EKACSLAKTAFDEAIAELDTL | |
Retrocopy | KQTTMLNF*QAYQEPFEISKKEEIQPTHPI*LGLALNFSVFYYEILNSTEKACSLAKTAFDEAIAELDTL |
Parental | NEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN |
NEES.KDSTLIMQLLRD.LTL.TSENQGDEGDAGEG.N | |
Retrocopy | NEES*KDSTLIMQLLRDSLTL*TSENQGDEGDAGEGDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 500 .87 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 462 .89 RPM |
SRP007412_cerebellum | 0 .19 RPM | 312 .02 RPM |
SRP007412_heart | 0 .00 RPM | 110 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 197 .30 RPM |
SRP007412_liver | 0 .00 RPM | 55 .46 RPM |
SRP007412_testis | 0 .08 RPM | 34 .26 RPM |