RetrogeneDB ID: | retro_mmul_673 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214252372:653..1383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18051 | ||
Ensembl ID: | ENSMMUG00000013206 | ||
Aliases: | None | ||
Description: | 14-3-3 protein beta/alpha [Source:RefSeq peptide;Acc:NP_001245273] |
Percent Identity: | 70.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQK |
....KS.LVQKAK.AEQAE..DD.AAA.K....QGH....E..NL.S..Y.N..GARRSSW..ISS.EQ. | |
Retrocopy | LEVTKSVLVQKAKTAEQAECGDDVAAAGKTAMPQGHAPPTEDSNLPSATYRNMAGARRSSWILISSTEQG |
Parental | TERNEKKQQMGKEYRE-KIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDN |
T.RNEK.QQMGKEYR..K.EAEL.DICN.V.E.L...L.P.ATQ.ESKVF.LKMKGD.FRYL..VASGDN | |
Retrocopy | TGRNEK-QQMGKEYRG<KREAELLDICNEVPERLGRSLTPHATQLESKVF-LKMKGDHFRYLFGVASGDN |
Parental | KQTTVSNSQQ-AYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
KQT...NSQQ.AYQEA.EISKK..QPT.PIRLGLALNFS.F.Y.ILNSPEKACSL..TAFDEAI.ELDTL | |
Retrocopy | KQTSLLNSQQ<AYQEASEISKKDRQPTQPIRLGLALNFSAFCYGILNSPEKACSLVNTAFDEAIPELDTL |
Parental | NEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN |
.E.SYKDST.IMQ.LRD.LTLWT..NQG..GDAGEGEN | |
Retrocopy | SEVSYKDSTPIMQ*LRDSLTLWTLGNQGEAGDAGEGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 500 .87 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 462 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 312 .02 RPM |
SRP007412_heart | 0 .00 RPM | 110 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 197 .30 RPM |
SRP007412_liver | 0 .00 RPM | 55 .46 RPM |
SRP007412_testis | 0 .04 RPM | 34 .26 RPM |