RetrogeneDB ID: | retro_itri_887 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393338.1:1086518..1087253(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSSTOG00000023864 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 91.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
M.KNELVQKAKLAEQ.ER.DDMAACMKSVTEQGAELSN.ERNLLSVAYKNVVGA.RSSWRVVSS.EQKTE | |
Retrocopy | MNKNELVQKAKLAEQVERCDDMAACMKSVTEQGAELSNKERNLLSVAYKNVVGAHRSSWRVVSSFEQKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
GAEKKQ.MAREY.EKIETELR.ICNDVLSLLEKFLIP.ASQAESKVFYLKMKGDYYRYLAEVAA.DDKKG | |
Retrocopy | GAEKKQPMAREYMEKIETELREICNDVLSLLEKFLIPTASQAESKVFYLKMKGDYYRYLAEVAACDDKKG |
Parental | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
IVDQSQQAYQEA.EISKKEMQPTHPIRLGLALNFSVFY.EILNSP.KA.S.AKTAFDEAIAELDTLSEES | |
Retrocopy | IVDQSQQAYQEASEISKKEMQPTHPIRLGLALNFSVFYCEILNSPDKAFSPAKTAFDEAIAELDTLSEES |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
YKDS.LIMQ.LRDNLTLWTSDTQ.DEA.AGEGGEN | |
Retrocopy | YKDSNLIMQFLRDNLTLWTSDTQEDEAKAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |