RetrogeneDB ID: | retro_mmul_2136 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:23408280..23408802(+) | ||
Located in intron of: | ENSMMUG00000015971 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2328 | ||
Ensembl ID: | ENSMMUG00000006489 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
Percent Identity: | 81.03 % |
Parental protein coverage: | 70.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KKQQMAREYREKIETELRDICN--DVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGI |
K.Q...R......E...R........LSLLEKFLIPNASQAESKVF.LKMKGDYYRYL.EVAA.DDK.GI | |
Retrocopy | KRQKVLRKNSRWLENTERKLRQS*EILSLLEKFLIPNASQAESKVFHLKMKGDYYRYLTEVAADDDK*GI |
Parental | VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESY |
.D.SQQAYQEAFE.SKKEMQPTHPIRL.LALNFSVFYYEILNSPEKAC.LAKTAFDEAIAE.DTLSEESY | |
Retrocopy | MDLSQQAYQEAFETSKKEMQPTHPIRLDLALNFSVFYYEILNSPEKACCLAKTAFDEAIAEFDTLSEESY |
Parental | KDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
KDSTLIM.LLRDNLTLWTSDTQGD.AEAGEGGEN | |
Retrocopy | KDSTLIMHLLRDNLTLWTSDTQGDKAEAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .56 RPM | 470 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 603 .38 RPM |
SRP007412_cerebellum | 0 .26 RPM | 291 .68 RPM |
SRP007412_heart | 0 .06 RPM | 88 .86 RPM |
SRP007412_kidney | 1 .29 RPM | 112 .56 RPM |
SRP007412_liver | 1 .90 RPM | 31 .79 RPM |
SRP007412_testis | 0 .45 RPM | 133 .55 RPM |