RetrogeneDB ID: | retro_mmul_2247 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:107468516..107469015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2328 | ||
Ensembl ID: | ENSMMUG00000006489 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
Percent Identity: | 69.94 % |
Parental protein coverage: | 68.98 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | NEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEK-KQQMAREYREKIETELRDIC-NDVLSLLEKFL |
N.ERNLLSVAY.NV.GA.RSSW...SSI.Q.TE.AEK.KQQMA.EYREK.E..LR.IC.ND.LSLLE.FL | |
Retrocopy | N*ERNLLSVAYINVAGACRSSWSIISSIGQMTEAAEK<KQQMA*EYREKMESDLRTIC>NDALSLLEEFL |
Parental | IPNASQAESKVFYLKMK-GDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEI-SKKEMQPTHPIRLGLALN |
IP.ASQA.SK..Y.K.K.G.Y..YLA.VAA..DKKGIVDQSQQA.Q.AFEI..KKE.Q.THPIRLGL... | |
Retrocopy | IPKASQAQSKI-Y*KRK<GGYFCYLAQVAA-SDKKGIVDQSQQAHQ*AFEI<QKKELQSTHPIRLGLDHK |
Parental | FSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
.SV.Y.E.LN..EK.C.LAKTAFDEAI..L.TL | |
Retrocopy | LSVLYCENLNFLEKVCCLAKTAFDEAIVGLHTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 470 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 603 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 291 .68 RPM |
SRP007412_heart | 0 .00 RPM | 88 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 31 .79 RPM |
SRP007412_testis | 0 .00 RPM | 133 .55 RPM |