RetrogeneDB ID: | retro_mmul_1859 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:136575874..136576441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2328 | ||
Ensembl ID: | ENSMMUG00000006489 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 77.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR-VVSSIEQKT |
MDKNEL.QKAKLA..AERYDDM.ACMKSVTE..A.LS.EERNLLSVA.KNVVGA.RSS.R.VVS.IEQK. | |
Retrocopy | MDKNELLQKAKLAK*AERYDDMVACMKSVTEREAQLSSEERNLLSVACKNVVGAHRSS*R<VVSIIEQKM |
Parental | EGAEKKQQMAR-EYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
EGAE.K.Q........KIETEL.DICNDVLSLLEK.L.PNAS.AESKVFY.KMKGDYY.YLAEVAAGDDK | |
Retrocopy | EGAE-KKQQMA>DNTKKIETELIDICNDVLSLLEKVLLPNASHAESKVFYFKMKGDYYHYLAEVAAGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACS |
KGIV.QSQQ.YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACS | |
Retrocopy | KGIVNQSQQSYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 470 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 603 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 291 .68 RPM |
SRP007412_heart | 0 .00 RPM | 88 .86 RPM |
SRP007412_kidney | 0 .23 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 31 .79 RPM |
SRP007412_testis | 0 .00 RPM | 133 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2390 |