RetrogeneDB ID: | retro_itri_483 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393294.1:9146799..9147466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSSTOG00000023864 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 90.58 % |
Parental protein coverage: | 90.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
MDKNELVQKAKLA.QAERYDDMAACMKSVTEQGAELSNEE.NLLSVAY.NVVGA.RSSWRVVSSIEQKTE | |
Retrocopy | MDKNELVQKAKLA*QAERYDDMAACMKSVTEQGAELSNEETNLLSVAY*NVVGAHRSSWRVVSSIEQKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIP-NASQAESKVFYLKMKGDYYRYLAEVAAGDDKK |
GAEKKQQMAREYREK.ETELRD.CNDVLS.LEKFLIP.NASQAE.KVFYLKMK.DYY.Y.AEV.AG..KK | |
Retrocopy | GAEKKQQMAREYREKMETELRDNCNDVLSFLEKFLIP>NASQAETKVFYLKMKRDYYHYMAEVSAGHNKK |
Parental | GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEE |
GI.DQSQQ.YQE.FEISKKEMQP.HPIRLGLALNFSVFYYEILNSPEKACSLAKT.FDEAIAELDTLSEE | |
Retrocopy | GIADQSQQTYQEVFEISKKEMQPIHPIRLGLALNFSVFYYEILNSPEKACSLAKTVFDEAIAELDTLSEE |
Parental | SYKDSTLIMQLLR |
.YKDSTLIMQLLR | |
Retrocopy | LYKDSTLIMQLLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |