RetrogeneDB ID: | retro_cfam_1590 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:26715048..26716180(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007199 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.18 % |
Parental protein coverage: | 77.69 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 2 |
Parental | KFASFIDKVRHLEQQNKILETKWSLLQQQKTSRSNIDNMFESYINNLRRQLDTLGQEKLKLEVELGNMQG |
KFASFI.K..H.EQQNKIL.TKWSLLQQQK...SN.DNM...YINN.R.QLDTLGQEKLK..V.L....G | |
Retrocopy | KFASFINKMQHTEQQNKILGTKWSLLQQQKIVWSNMDNMVKTYINNFRQQLDTLGQEKLKVAVDL---EG |
Parental | LVEDFKNKYEDEIKLRGDMENEFVLIKKDVDEAYMNKIELESRLEGLTDEINFLRQLYEEEIHELQSQIS |
LVEDFKN....E.K...D.ENEFVLI.KDV..AY.NK.ELES.L...TDEI.FLRQLYEE.IHE..SQ.S | |
Retrocopy | LVEDFKNR*R-EVKVHADVENEFVLIEKDVEKAYINKRELESHLDVPTDEIGFLRQLYEEDIHEP*SQVS |
Parental | DTSVVLSMDNSRSLDLDG-IIAEVKAQYEDIANRSRVEAETMYQIKYEELQTLAGKHGDDLRRTKTEISE |
D.S.VL.MDNS.SL.LD..IIAEVKAQYED.A..S..EA...YQIKYEELQTLA.KHG..L.RTK.EISE | |
Retrocopy | DMSMVLFMDNSHSLALDR<IIAEVKAQYEDTASWSWAEAKATYQIKYEELQTLARKHGANLPRTKMEISE |
Parental | MNRSISRLQAEIETLKNQRAALEAAIADAEQRGELAVKDANAKVAELEAALQRAKQDMARQLREYQELMN |
MN..I..L.A....LK.QRA.LEAA..D.E...EL..KDA.AK.A...AALQ.A..D.A.QL..YQE.MN | |
Retrocopy | MNQNIT*L*AYLKGLKGQRASLEAARVDTEEHKELDIKDASAKLA--KAALQQAN*DIA*QLHDYQEFMN |
Parental | VKLALDIEIATYRKLLEGEESRDRLESGMQNMSIHTKTTSGYSGGLN-LAYGGLTSPGLNYGQSSFQSGF |
..LA.DIEI....KLL.G..S...LE.G.QN..IHTKTT.G..GGL..L.Y.G..SPGLNY..SSFQS.. | |
Retrocopy | I*LA*DIEITIFCKLLKGDTS--WLEAGRQNTNIHTKTTIGF*GGLS<LGYRGFRSPGLNYNLSSFQSSL |
Parental | GPGG---SFSRSSSSKAVVVKKIETRDGKLVSESSDVL |
G..G...SF....SS.A.VVKKI.TRDGKLV.ESSDVL | |
Retrocopy | GSSGGSSSFIHGRSSNAIVVKKIMTRDGKLVFESSDVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .88 RPM |
SRP017611_brain | 0 .00 RPM | 0 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 94 .50 RPM |
SRP017611_liver | 0 .00 RPM | 245 .17 RPM |