RetrogeneDB ID: | retro_mmul_1178 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:36918772..36919853(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000002477 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 80.87 % |
Parental protein coverage: | 75.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ |
MSIRVTQKSYKVSTSGP.AFSS.SY.SGPG...SS.SFS.VGSS...GGLGGGYGGASG..GITAV.VNQ | |
Retrocopy | MSIRVTQKSYKVSTSGPPAFSSHSYMSGPGVYLSSLSFS*VGSSNLQGGLGGGYGGASGVKGITAVIVNQ |
Parental | SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFID-KVRFLEQQNKMLETKWSLLQQQKTARSNMDNM |
SLLS.LNLEVDPNIQAV.T.EKEQIKTLNNKFAS.....VRFLEQQNKMLE.KWSLLQQQKT..SNMDN. | |
Retrocopy | SLLSLLNLEVDPNIQAVCTEEKEQIKTLNNKFASLAR<RVRFLEQQNKMLEAKWSLLQQQKTTQSNMDNK |
Parental | FESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVE |
FESYINNLR.QLETLGQE.LKLEAELGNMQGLVEDFKNK.ED.I.K.TEMENEFVLIKK.VDEAYMNKV. | |
Retrocopy | FESYINNLRQQLETLGQEELKLEAELGNMQGLVEDFKNKEEDGISKHTEMENEFVLIKKEVDEAYMNKVQ |
Parental | L-ESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEA |
..ES.LEGLTDEINFLRQLYEEEIRELQSQIS..SVVLSMDNS.SLD.DSIIAEVKAQYEE.AN.S.AE. | |
Retrocopy | V<ESLLEGLTDEINFLRQLYEEEIRELQSQISNVSVVLSMDNSGSLDVDSIIAEVKAQYEETANSSWAET |
Parental | ESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKD |
ESMYQIKYEELQ.LAGKHGDDLRR.KTEISEMNRNIS.LQAEI....G.............Q....A.KD | |
Retrocopy | ESMYQIKYEELQTLAGKHGDDLRRRKTEISEMNRNISQLQAEI---EGLKKARGLSWRPPSQMPSSALKD |
Parental | ANAKLSELEAALQRAK |
ANAKLSELEAALQRAK | |
Retrocopy | ANAKLSELEAALQRAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .06 RPM | 0 .06 RPM |
SRP007412_heart | 0 .18 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .20 RPM | 33 .41 RPM |
SRP007412_testis | 0 .04 RPM | 0 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4203 |
Gorilla gorilla | retro_ggor_66 |
Pongo abelii | retro_pabe_3439 |