RetrogeneDB ID: | retro_mmul_1697 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:87613864..87614726(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 84.78 % |
Parental protein coverage: | 59.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNS-RSLDMDSIIAEVK |
...DVDEAYMNKVELES.LEGLTDEINFLRQLYEEEI.ELQSQISDTS.VLSMDNS...LDMDSIIAEVK | |
Retrocopy | LSSDVDEAYMNKVELESLLEGLTDEINFLRQLYEEEIQELQSQISDTSAVLSMDNS>APLDMDSIIAEVK |
Parental | AQYEEIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAA |
.QYE.IAN.S.AEAESM.QIKYEELQ.LAGK..D.LR..KTEISEMNRNIS.LQAE.E.LKGQRASLEAA | |
Retrocopy | TQYEVIANCSLAEAESMDQIKYEELQMLAGKRWDNLRHAKTEISEMNRNISWLQAETESLKGQRASLEAA |
Parental | IADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLES |
IADAEQ.GELAIKDANAKLSEL.AALQRAKQD..R.LR.YQELMN.KLALDIEI.TYRKLLE.EES.LES | |
Retrocopy | IADAEQHGELAIKDANAKLSEL*AALQRAKQDRVR*LRGYQELMNIKLALDIEITTYRKLLEDEESQLES |
Parental | GMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLV |
GMQNM.IHTKTTSGYAGGLSSAY.GLTSPGLS..LGSSFGSGAGSSSFS.TSS.RA.VV.KI.TR.GKLV | |
Retrocopy | GMQNMFIHTKTTSGYAGGLSSAYEGLTSPGLSCDLGSSFGSGAGSSSFSHTSSTRAMVV-KIKTRYGKLV |
Parental | SESSDVLPK |
SESSDVLP. | |
Retrocopy | SESSDVLPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3138 |