RetrogeneDB ID: | retro_pabe_569 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:8883789..8884836(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468F2127 | ||
Ensembl ID: | ENSPPYG00000004562 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365] |
Percent Identity: | 82.1 % |
Parental protein coverage: | 77.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RISSSS-SRV---SSSFGLG-GYG-GSGMGGITAVTVNQSL-SPV-LEVDPNI-AVRTQEKEQIKTLNNK |
RISS.S.SRV...S...GLG.GYG..SGMGGITAVTV.QSL.SP..LEV.PNI.AVRTQEKEQI.TLN.K | |
Retrocopy | RISSLSFSRVGILSFQGGLGVGYGVASGMGGITAVTVKQSLLSPLNLEVVPNIQAVRTQEKEQIETLN-K |
Parental | FASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGL |
FASFI.KVRFLEQQNKMLETKWSLLQ.QKTA.SNM..M.ESYINNLRRQLETLG.EK.KLEAELGNM... | |
Retrocopy | FASFINKVRFLEQQNKMLETKWSLLQEQKTAQSNM-HMLESYINNLRRQLETLGREKPKLEAELGNML-V |
Parental | VEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISD |
VEDFKNKYEDEINK.TEMENEFVLIKKDVDEAY.NKVELES.LEGLT.EINFL.QLYEEEI..LQSQISD | |
Retrocopy | VEDFKNKYEDEINKGTEMENEFVLIKKDVDEAYINKVELESGLEGLTEEINFLKQLYEEEIPDLQSQISD |
Parental | TSVVLSMDNSRSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMN |
TSV.LSMDNS.SLDM.SIIAEVK.QYE.IAN.SRAEAESM.QIKYEELQ.LAGK.GD.LR.TKTEIS.MN | |
Retrocopy | TSVALSMDNSHSLDMESIIAEVKMQYEEIANHSRAEAESMDQIKYEELQTLAGKYGDHLRSTKTEISKMN |
Parental | RNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVK |
RNIS..QAEIEGLKGQ.ASLEAAIA.AEQRGELA.K.AN.K.SELEAALQR.KQDMA.Q.REYQELMN.. | |
Retrocopy | RNISWPQAEIEGLKGQKASLEAAIANAEQRGELAVKEANTKVSELEAALQRVKQDMAWQQREYQELMNER |
Parental | LA |
.A | |
Retrocopy | QA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .12 RPM |
SRP007412_heart | 0 .00 RPM | 23 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 106 .83 RPM |
SRP007412_liver | 0 .03 RPM | 163 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_644 |
Gorilla gorilla | retro_ggor_564 |
Macaca mulatta | retro_mmul_2431 |