RetrogeneDB ID: | retro_hsap_1513 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:71151003..71152498(+) | ||
Located in intron of: | ENSG00000137821 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259470 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSG00000170421 | ||
Aliases: | KRT8, CARD2, CK-8, CK8, CYK8, K2C8, K8, KO | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 84.33 % |
Parental protein coverage: | 97.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GISAWFGPPASTPASTMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISS-SSFSRVGSSNFRGGL-GG |
GISAWF.PPASTPASTMSIRVTQKSYK.STSGPRAFSS.SYTSGP..RIS....FSRVGSS.F.GGL.GG | |
Retrocopy | GISAWFSPPASTPASTMSIRVTQKSYKMSTSGPRAFSSCSYTSGPSARIST<LRFSRVGSSSFWGGLGGG |
Parental | GY-GGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQ-EKEQIKTLNNKFASFIDKVRFLEQQNKMLE |
...GGASGMGGITAVTVNQSLLSPL.LEVDPNIQA..TQ..KEQIK.LNNKFASFIDKV.FLEQQNKMLE | |
Retrocopy | WV<GGASGMGGITAVTVNQSLLSPLNLEVDPNIQALHTQ<KKEQIKALNNKFASFIDKVWFLEQQNKMLE |
Parental | TKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEME |
TKWSLLQQQK.AR.N..NMF.SYINNLR.QLETL.QEKLKLE.ELGNMQGLVEDFKNKYEDEINKRTE.E | |
Retrocopy | TKWSLLQQQKMARNNKNNMFQSYINNLRWQLETLSQEKLKLEVELGNMQGLVEDFKNKYEDEINKRTEVE |
Parental | NEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSII |
NEFVLIKKDVDEAYMNK.ELES.LEGLTDE..FLRQL.EEEI.ELQS.ISD.SVVLSMDNS..LD..SII | |
Retrocopy | NEFVLIKKDVDEAYMNKIELESCLEGLTDEMDFLRQLFEEEIWELQSHISDISVVLSMDNSYFLDTVSII |
Parental | AEVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRAS |
AEVK.Q.E.IANRS.AEAESM.QIKYEELQ.LAGK.G.DL...KTEISEMN.NISRLQAEI.GLKGQ.AS | |
Retrocopy | AEVKVQ*EEIANRSQAEAESMHQIKYEELQTLAGKLGHDLQPIKTEISEMNWNISRLQAEIKGLKGQMAS |
Parental | LEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEES |
LEA.IAD.EQRGELA.KDANAKLSELEA.LQ.A.QDM..QLREYQELMNVKLAL.I..ATYRKLLEGEES | |
Retrocopy | LEATIADVEQRGELAVKDANAKLSELEASLQWARQDMVWQLREYQELMNVKLALGIKTATYRKLLEGEES |
Parental | RLESGMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSRTSSSRAVVV-KKIETR |
RLESGMQNM.IHTKTTSGYAGGLSS.YG.LTSPGLSYSLGSSFGSGAGSSSFSRT..S...VV.KKIETR | |
Retrocopy | RLESGMQNMTIHTKTTSGYAGGLSSTYGDLTSPGLSYSLGSSFGSGAGSSSFSRTG-STRAVV>KKIETR |
Parental | DGKLVSESSDVLPK |
DGKLVS.SSD.LPK | |
Retrocopy | DGKLVSKSSDILPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 6 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 4 .42 RPM |
bodymap2_brain | 0 .00 RPM | 0 .56 RPM |
bodymap2_breast | 0 .00 RPM | 56 .07 RPM |
bodymap2_colon | 0 .02 RPM | 132 .45 RPM |
bodymap2_heart | 0 .07 RPM | 32 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 197 .95 RPM |
bodymap2_liver | 0 .00 RPM | 168 .59 RPM |
bodymap2_lung | 0 .00 RPM | 176 .67 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .63 RPM |
bodymap2_ovary | 0 .02 RPM | 45 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 95 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .00 RPM | 29 .77 RPM |
bodymap2_thyroid | 0 .00 RPM | 375 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1160 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |