RetrogeneDB ID: | retro_hsap_1599 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:77271351..77272837(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259565 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSG00000170421 | ||
Aliases: | KRT8, CARD2, CK-8, CK8, CYK8, K2C8, K8, KO | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 82.24 % |
Parental protein coverage: | 97.46 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | ISAWFGPPASTPASTMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISSSSFSRVGSSNFRGGLGGGYG |
.S.WF.P.ASTPASTMSIRVT.KSYKVSTSGP.AFSSRSY.SGPG..ISS.SFS.VGSS.F.GGLGGGYG | |
Retrocopy | MSTWFSPSASTPASTMSIRVT*KSYKVSTSGPQAFSSRSYMSGPGAHISSLSFS*VGSSSFQGGLGGGYG |
Parental | GASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSL |
.AS..GGITAV...QSLLSPL.LEVDPNIQA..TQEKE.IK.LNNKFASFIDKV.FLEQQNKMLETKWSL | |
Retrocopy | RASSIGGITAVMIIQSLLSPLNLEVDPNIQAMHTQEKEHIKSLNNKFASFIDKVQFLEQQNKMLETKWSL |
Parental | LQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVL |
.QQQK.ARSN.D..FESYINNL..QLETLGQ.KLKLEA.LGNMQGLVEDFKNK..DEIN.R.EMENEFVL | |
Retrocopy | VQQQKKARSNVDHQFESYINNLWQQLETLGQDKLKLEAGLGNMQGLVEDFKNK*DDEINERAEMENEFVL |
Parental | IKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKA |
.KKDVDEAY.NKV.LES.LE.LTDEINFLRQLYEEEI.EL.SQIS.T.VVLSMDNSR.LD.DSII.EVKA | |
Retrocopy | LKKDVDEAYINKVQLESGLEALTDEINFLRQLYEEEIQELPSQISHTPVVLSMDNSRCLDTDSIITEVKA |
Parental | QYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAI |
QYE.IANRSRAEAESM.Q.K.EELQ.LAGKHGDDL..TKTEISEMN.NISRLQAEIEGLK.QRASLEAA. | |
Retrocopy | QYEEIANRSRAEAESMHQSKHEELQTLAGKHGDDLQCTKTEISEMNWNISRLQAEIEGLKDQRASLEAAM |
Parental | ADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEI-ATYRKLLEGEESRLES |
.DAEQRGELA.KDANAKLSELEAAL..AKQDM.RQL.EYQELMNV.L.LD.EI..TYRKLLEGEESRL.S | |
Retrocopy | VDAEQRGELAVKDANAKLSELEAALRQAKQDMVRQLPEYQELMNVRLVLDMEI<PTYRKLLEGEESRLAS |
Parental | GMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLS-YSLGSSFGSG-AGSSSFSRTSSSRAVVVKKIETRDGK |
GMQNMSI.TKTTSGYA..LSS.YGG.TSP.LS.Y.LGSSFGSG..GSSSFSRTSS....VVKK.ETRDGK | |
Retrocopy | GMQNMSIQTKTTSGYADVLSSGYGGVTSPSLS>YGLGSSFGSG>GGSSSFSRTSS---MVVKKMETRDGK |
Parental | LVSESSDVLPK |
LVS.SSDVLP. | |
Retrocopy | LVS*SSDVLPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 4 .42 RPM |
bodymap2_brain | 0 .02 RPM | 0 .56 RPM |
bodymap2_breast | 0 .00 RPM | 56 .07 RPM |
bodymap2_colon | 0 .02 RPM | 132 .45 RPM |
bodymap2_heart | 0 .02 RPM | 32 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 197 .95 RPM |
bodymap2_liver | 0 .00 RPM | 168 .59 RPM |
bodymap2_lung | 0 .00 RPM | 176 .67 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 95 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .02 RPM | 29 .77 RPM |
bodymap2_thyroid | 0 .00 RPM | 375 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |