RetrogeneDB ID: | retro_mmul_1122 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:110134323..110135132(-) | ||
Located in intron of: | ENSMMUG00000030914 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 74.09 % |
Parental protein coverage: | 56.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQSLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFA |
SSSSF...G..S...GL.GGY.GAS.MG..TA..VNQSLLS...LEV.PNIQAV.TQEKEQIKTL..KFA | |
Retrocopy | SSSSFQ--GGLSASTGLNGGYAGASDMGDMTAIMVNQSLLSSFKLEVNPNIQAVCTQEKEQIKTLDKKFA |
Parental | SFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQ-EKLKLEAELGNMQGLV |
SFI.K..FLEQQNK.L.TKWSLLQQQKT...NMD..FES.IN.L..QL.TLGQ.EKLKLE.ELG.MQG.. | |
Retrocopy | SFINKLWFLEQQNKVLDTKWSLLQQQKTVGNNMDETFESHINTLWWQLDTLGQ<EKLKLEVELGDMQGRL |
Parental | EDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDT |
EDFKNK.EDEINK.TEMENEFV.IKKDVDEAYMNK.ELESRLEGLTDEINFL.QLYE....EL.SQISDT | |
Retrocopy | EDFKNK*EDEINKHTEMENEFVFIKKDVDEAYMNKAELESRLEGLTDEINFLKQLYEGD-PELLSQISDT |
Parental | SVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTE |
S.VLS.DNS.SLDM.SII..V.AQYE.I.N.S.A.AES.YQIKYEELQ.L.GKH.DDL..TK.E | |
Retrocopy | SMVLSTDNSCSLDMASIITKVCAQYEDISNHSQAKAESTYQIKYEELQKLSGKHWDDLHCTKRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .12 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .35 RPM | 22 .18 RPM |
SRP007412_liver | 0 .32 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |