RetrogeneDB ID: | retro_mmul_1351 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:46118239..46119687(-) | ||
Located in intron of: | ENSMMUG00000013999 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 98.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ |
MSIR.TQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ | |
Retrocopy | MSIRETQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ |
Parental | SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF |
SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF | |
Retrocopy | SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF |
Parental | ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL |
ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL | |
Retrocopy | ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL |
Parental | ESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAES |
ESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAES | |
Retrocopy | ESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAES |
Parental | MYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN |
MYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN | |
Retrocopy | MYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN |
Parental | AKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEES-RLESGMQNMSIHTKTTSGY |
.KLSELEAALQ.AKQDM.RQLREYQELMNVKLALDIEIATYRKLLEGEES.RLESGMQNMSIHTKTTSGY | |
Retrocopy | TKLSELEAALQWAKQDMVRQLREYQELMNVKLALDIEIATYRKLLEGEES<RLESGMQNMSIHTKTTSGY |
Parental | AGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK |
AGGLSSAYGGLTSPG.SYGLGSSFGSG.GSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK | |
Retrocopy | AGGLSSAYGGLTSPGFSYGLGSSFGSGEGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .06 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .04 RPM | 0 .94 RPM |