RetrogeneDB ID:

retro_mmul_886

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:88466984..88468433(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.3111
Ensembl ID:ENSMMUG00000002163
Aliases:None
Description:keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474]


Retrocopy-Parental alignment summary:






>retro_mmul_886
ATGTCCATCAGGGTGACCCAGAAGTCCTACAAGGTGTCCACCTCTGGCCCCCGGGCCTTCAGCAGCCACTCCTACATGAG
TGGGCCCGGTGCCCGCATCAGCTCCTCGAGCTACTCCCGAGTGGGAAGCAGCAGCTTTCGGGGTGGCCTGGGCGGCGGCT
ATGGTGGGGCCAGCGGCATGGGAGGCATCACCGCAGTCACGGTCAACCAGAGCCTGCTGAGTCCCCTTAACCTGGAGGTG
GACCCCAACATCCAGGCCGTGCGCACCCAGGAGAAGGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATAGA
CAAGGTACGGTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAGACGGCTCGGA
GCAACATGGACAACATGTTTGAGAGTTACATCAACAACCTTAGGCGGCAGCTGGAGACTCTGGGCCAGGAGAAGCTGAAG
CTGGAGGCAGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTATGAGGATGAGATCAATAAACGTAC
AGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCC
TGGAAGGGCTGACTGATGAGATCAACTTCCTCAGGCAGCTGTATGAAGAGGAGATCCGGGAGCTGCAGTCCCAGATCTCG
GATACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACATGGACAGCATCATGGCTGAGGTCAAGGCACAGTA
GGAGGAGATCGCCAACCGCAGCCGGGCTGAGGCTGAGAGCATGTACCAGATCAAGTATGAGGAGCTGCAGAGCCTGGCTG
GGAAGCACGGGGATGACCTGCGGCGCACCAAGACTGAAATCTCCGAGATGAACCGGAACATCAGCCGGCTTCAGGCTGAG
ATTGAGGGCCTCAAAGGCCAGAGGGCTTCCCTGGAGGCCGCCATTGCAGATGCCGAGCAGCGTGGAGAGCTGGCCATTAA
GGATGCCAATGCCAAGTTGTCCGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGCAAGACATGGCGCGGCAGCTGCGTGAGT
ACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGC
CGGCTGGAGTCCGGGATGCAGAACATGAGTATTCATACGAAGACCACCAGCGGCTATGCAGGTGGTCTGCGCTCGGCCTA
TGGGGACCTCACAAGCCCCGGCCTCAGCTACGGCCTGTGTTCCAGCTTTGGCTCTGGCCCGGGCTCCAGCTCCTTCAGCC
GCACCAGCTCCTCCAGGGCCGTGGTTGTGAAGAAGATCGAGACACGCGATGGGAAGCTGGTGTCCGAGTCCTCTGACGTC
CTGCCCAAA

ORF - retro_mmul_886 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.14 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ
MSIRVTQKSYKVSTSGPRAFSS.SY.SGPGARISSSS.SRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ
RetrocopyMSIRVTQKSYKVSTSGPRAFSSHSYMSGPGARISSSSYSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ
ParentalSLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF
SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF
RetrocopySLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF
ParentalESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL
ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL
RetrocopyESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL
ParentalESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAES
ESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSI.AEVKAQ.EEIANRSRAEAES
RetrocopyESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIMAEVKAQ*EEIANRSRAEAES
ParentalMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN
MYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN
RetrocopyMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDAN
ParentalAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYA
AKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYA
RetrocopyAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYA
ParentalGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK
GGL.SAYG.LTSPGLSYGL.SSFGSG.GSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK
RetrocopyGGLRSAYGDLTSPGLSYGLCSSFGSGPGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .24 RPM
SRP007412_cerebellum 0 .00 RPM 0 .06 RPM
SRP007412_heart 0 .00 RPM 8 .24 RPM
SRP007412_kidney 0 .00 RPM 22 .18 RPM
SRP007412_liver 0 .00 RPM 33 .41 RPM
SRP007412_testis 0 .08 RPM 0 .94 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_886 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_886 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_886 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 16 parental genes, and 151 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000071992 retrocopies
Callithrix jacchus ENSCJAG000000181473 retrocopies
Cavia porcellus ENSCPOG000000026155 retrocopies
Dasypus novemcinctus ENSDNOG000000074003 retrocopies
Felis catus ENSFCAG000000002982 retrocopies
Homo sapiens ENSG0000017042128 retrocopies
Gorilla gorilla ENSGGOG0000001467318 retrocopies
Macaca mulatta ENSMMUG00000002163 22 retrocopies
Mustela putorius furoENSMPUG000000064417 retrocopies
Mus musculus ENSMUSG000000493821 retrocopy
Nomascus leucogenys ENSNLEG000000177338 retrocopies
Oryctolagus cuniculus ENSOCUG000000069451 retrocopy
Otolemur garnettii ENSOGAG0000001174016 retrocopies
Pongo abelii ENSPPYG0000000456231 retrocopies
Pteropus vampyrus ENSPVAG000000093603 retrocopies
Rattus norvegicus ENSRNOG000000097791 retrocopy



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