RetrogeneDB ID: | retro_cfam_1036 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:33349164..33350647(-) | ||
Located in intron of: | ENSCAFG00000007500 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007199 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSIRVTQKSYKMSTSSPRAFSSRSYTSGPSSRISSSAFSRVGSSSGSFRGGLNSSMSVVGGYGG-PGVVG |
MSIRVTQK..K.STSSP.AFSS.S..SGP.S.ISSSAFSRVGSSSGSF.GGLNSSMSVVGGYGG.PGV.G | |
Retrocopy | MSIRVTQKFCKVSTSSPQAFSSHSCMSGPDSHISSSAFSRVGSSSGSFQGGLNSSMSVVGGYGG>PGV-G |
Parental | SITAVSVNQSLLNPLKLEVDPNIQAVRTQEKEQIKSLNNKFASFIDKVRHLEQQNKILETKWSLLQQQKT |
.ITAVSVNQSLL.PLKLE.DPNIQAV.TQEKE.I.SLNNKFASFI.K.RHLEQQNKILETKW.LLQQQKT | |
Retrocopy | DITAVSVNQSLLSPLKLEEDPNIQAVHTQEKE*INSLNNKFASFINKFRHLEQQNKILETKWGLLQQQKT |
Parental | SRSNIDNMFESYINNLRRQLDTLGQEKLKLEVELGNMQGLVEDFKNKYEDEIKLRGDMENEFVLIKKDVD |
.RSNIDNMFESYINNLRRQLDT.GQEKLKLEVELGNMQGLVED.KNKYEDEIKL.GDMENEFVLIKKDVD | |
Retrocopy | ARSNIDNMFESYINNLRRQLDTPGQEKLKLEVELGNMQGLVEDLKNKYEDEIKLCGDMENEFVLIKKDVD |
Parental | EAYMNKIELESRLEGLTDEINFLRQLYEEEIHELQSQISDTSVVLSMDNSRSLDLDGIIAEVKAQYEDIA |
EAYMNKIELES.LEGLT.EINFLRQLYEEEIHELQSQISD.SVVLSMDNS.SLDLDGIIA.VKAQYEDIA | |
Retrocopy | EAYMNKIELESHLEGLTEEINFLRQLYEEEIHELQSQISDMSVVLSMDNSCSLDLDGIIAKVKAQYEDIA |
Parental | NRSRVEAETMYQIKYEELQTLAGKHGDDLRRTKTEISEMNRSISRLQAEIETLKNQRAALEAAIADAEQR |
NRSRVEAETMYQIKY.ELQTLAGKHGDDL..TKTEISEMNRSISRLQAEIETLKNQRAALEAAIA.A.QR | |
Retrocopy | NRSRVEAETMYQIKYKELQTLAGKHGDDLLCTKTEISEMNRSISRLQAEIETLKNQRAALEAAIANAKQR |
Parental | GELAVKDANAKV-AELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRD-RLESGMQ |
GELA.KDANAKV.AELEAALQRAKQDM..QLREYQELMNVKLALDIEIATY.KLLEGEE.....LESGMQ | |
Retrocopy | GELAIKDANAKVLAELEAALQRAKQDMVQQLREYQELMNVKLALDIEIATYHKLLEGEEMQNIWLESGMQ |
Parental | NMSIHTKTTSGYSGGLNLAYGGLTSPGLNYGQSSFQSGFGPGGSFSRSSSSKAVVVKKIETRDGKLVSES |
NMSIHTKTTSGYSGGLNLAYGGLTSPGLNYGQSSFQS.FGPGGSFSRSSSSKAVVVKKIETRDGKLVSES | |
Retrocopy | NMSIHTKTTSGYSGGLNLAYGGLTSPGLNYGQSSFQSSFGPGGSFSRSSSSKAVVVKKIETRDGKLVSES |
Parental | SDVLPK |
SDVLPK | |
Retrocopy | SDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 0 .88 RPM |
SRP017611_brain | 0 .00 RPM | 0 .08 RPM |
SRP017611_kidney | 0 .07 RPM | 94 .50 RPM |
SRP017611_liver | 0 .07 RPM | 245 .17 RPM |