RetrogeneDB ID: | retro_ogar_1076 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873535.1:18840149..18841620(+) | ||
Located in intron of: | ENSOGAG00000005371 | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000028960 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000011740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MSIRVT-QKSYKVSTSAPRAFSSRSYSSGPGARISSSSFSRVGSGSFRSGLSTGLGLGGGYAGAGGMGGI |
MSIRVT.QKSYKVS.SAPRAFSSRSYSS.P.A.ISSSSFS.VGS.SF.SGL.TGLGLGGGY.GAG.MGGI | |
Retrocopy | MSIRVT<QKSYKVSISAPRAFSSRSYSSRPSAHISSSSFSWVGSSSFLSGLGTGLGLGGGYNGAGDMGGI |
Parental | TAVTVNQSLLSPLNLEVDPNIQAVRTQEKEEIKTLNNKFASFIDKVRFLEQQNKMLETKWNLLQQQKTAR |
TAVTVNQ.LLS.LNLEVDPNIQAV.TQEKEEI.TLNNKFASF.DK...LEQQN..LETKWNLLQQ.K..R | |
Retrocopy | TAVTVNQNLLSSLNLEVDPNIQAVCTQEKEEIETLNNKFASFSDKMHLLEQQNRLLETKWNLLQQKKMDR |
Parental | SNMDSMFESYINNLRRQLDTLGQEKLKLEAELGNMQGLVEDFKNKYEEEINK-RTEMENEFVLIKKDVDE |
SNMDSMFESYINNL.RQLDTLGQEK.KLEAELGNMQGLVEDFKNKYEE.INK...EMENE.VLIKKDVDE | |
Retrocopy | SNMDSMFESYINNLLRQLDTLGQEKRKLEAELGNMQGLVEDFKNKYEEKINK<ANEMENESVLIKKDVDE |
Parental | AYMNKVELESRLDGLTDEINFLRQLYEEEIRELQS-QISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEIA |
.YMNKV.LESRL.G.TDEINFLRQLYEEEI..LQS.QIS.TSVVLS.DNS.SLDMD.IIAEV..QY.EIA | |
Retrocopy | VYMNKVVLESRLEGPTDEINFLRQLYEEEICGLQS>QISNTSVVLSVDNSHSLDMDRIIAEVCTQYKEIA |
Parental | NRSRAEAESVYLTKYEELQVQAGKHGDDLRRTKTEISDMNRNISRLQNEIEALKGQRAALEASIADAEQR |
NRS.AEAESVY.TKYEELQVQAGK.GD.L.R.KTEISDMN.NIS.LQNEIEALKGQRAALEASI.DAEQ. | |
Retrocopy | NRSWAEAESVYQTKYEELQVQAGKQGDNLQRSKTEISDMNQNISQLQNEIEALKGQRAALEASIEDAEQG |
Parental | GELALKDANAKLAQLEAALRQAKQDMAQQLREYQDLMNVKLALDVEIATYRKLLEGEESRLESGMQNMSI |
GELALKD.NAKLAQLEAALRQAKQ..AQQL.EYQDLMNVKLALD.EIATY.KLLEGEES.LESGMQNMSI | |
Retrocopy | GELALKDTNAKLAQLEAALRQAKQGKAQQLCEYQDLMNVKLALDIEIATYHKLLEGEESQLESGMQNMSI |
Parental | HTKTTSGYSGGLSSAYGGLTSPGLSYGLSSFQTGFGS-GGGSSSFSRTSSRAVVVKKIETRDGKLVSESS |
H.KTTSGYSGGLS.A..GL.SPGLSYGLSSFQTGFGS.GG.S.SFSRTSSRAVVVKKIETRDGKLV.ESS | |
Retrocopy | HPKTTSGYSGGLSLAFEGLISPGLSYGLSSFQTGFGS<GGDSRSFSRTSSRAVVVKKIETRDGKLVPESS |
Parental | DVLPK |
DVLPK | |
Retrocopy | DVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |