RetrogeneDB ID: | retro_ggor_382 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:45609513..45610731(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSGGOG00000014673 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.98 % |
Parental protein coverage: | 80.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLR |
EVD.NIQA..TQEKEQIK...NKFASFIDKVRFL.QQNKMLETKWSLLQQQ.TA.SN.DNMF.SYINNLR | |
Retrocopy | EVDLNIQAMHTQEKEQIKNPTNKFASFIDKVRFLGQQNKMLETKWSLLQQQQTAGSNTDNMFQSYINNLR |
Parental | RQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLT |
RQLETLGQEKLKLEAELGN.QGLVEDFKNK.EDEINKRTEMEN.FVLIKKDVDEAYMNK.ELES.LEGLT | |
Retrocopy | RQLETLGQEKLKLEAELGNTQGLVEDFKNK*EDEINKRTEMENQFVLIKKDVDEAYMNKLELESGLEGLT |
Parental | DEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEE |
DEINFLR.LYEE.IRELQSQIS.TSVVLSMDNSRS.D.DSIIAEVKAQYE.IANR.RAEAESMYQIKYE. | |
Retrocopy | DEINFLRWLYEEKIRELQSQISATSVVLSMDNSRSMDTDSIIAEVKAQYE-IANRRRAEAESMYQIKYEK |
Parental | LQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEA |
LQ.LAGKH.DD...TKTE.SE.N.NIS.LQAE.EGLKGQRASLEAAI.DAEQ..ELA.K.ANAKLSELEA | |
Retrocopy | LQALAGKHWDDVQHTKTETSEINWNISGLQAETEGLKGQRASLEAAITDAEQPEELAVKGANAKLSELEA |
Parental | ALQRAKQDMARQLREYQELMNVKLALD--IEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYAGGLSSA |
ALQ.AKQDMARQLREYQELMNVKLALD..IEIATYRKLLEGEESRLESGMQNMSIHTKTTS.YAG.LSSA | |
Retrocopy | ALQPAKQDMARQLREYQELMNVKLALDIEIEIATYRKLLEGEESRLESGMQNMSIHTKTTSSYAGALSSA |
Parental | YGGLTSPGLSYGLGSSFGSGAGPSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK |
YGGLTSPGLSYGLGSSFGSG.G.SSFSRTSS.RAVVVKKI.T..GK.VS.S.DVLPK | |
Retrocopy | YGGLTSPGLSYGLGSSFGSGMGASSFSRTSSTRAVVVKKIQTCNGKPVSQSFDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 0 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .24 RPM |
SRP007412_heart | 0 .03 RPM | 4 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 51 .36 RPM |
SRP007412_liver | 0 .11 RPM | 137 .80 RPM |
SRP007412_testis | 0 .00 RPM | 4 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_488 |