RetrogeneDB ID:

retro_ogar_2004

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873580.1:224361..225823(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027046
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000011740
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2004
ATGTACATCAGGGTTACCCAGAAGTCCTACCAGGAGTCCACCTCTACCTCATGGGCCTTCAGCAGCTGCTCATACAGCAG
TGGGCCCGGTGTCCGTATCAGCTCCTCCAGCTTCTCTCGGGTGGGCAGTGGCAGCTTCCTGAGTGGCCTGGGCACCAGCC
TGGGTCTAGGTGGAGGCTACGCTGGAGCTAGAGGTATGGGGGGCATCACAGCTGTCACAGTGAACCAGAGCCTGCTGAGC
CCGCTCAACCTGGAGGTGGACCCCAATATTCAGGCCGTGCACACCCAGGAGAAAGAGGAGATCAAGACCCTCAACAACAA
GTTTGACACCTTCATTGACAAGGTGTGCTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAACCTCCTGCAGC
AGCAGACGGCTCGCAGCAACATGGACAGCTTGTGTGAAAGCTGCATCAACAGCCTGTGGGACAGGTGGACACACTGGGCC
AGGGGAGGCTGACGCTGGAGGCAGAGGGCAGCAATGTGCAGGGCTGGTGGAGGACTTCAAGAGTTAGTATGAGGAGATCA
ACAAGCGTACAGAGATGGAAAATGACTTTTCCTCATCAAGAAGGATGTGGATGAAGCTACACGAACCAGGTGGAGCTGGA
GTCCCACCTGGAAGGGCTGACGGACGAAATCAACTTCCTCAGGCAGCTGTATGAAGAAGAGATCCGTGAGCTGCAGTCCC
AGATCTCAGACACGTCTGTGGTCCTGTCCATGGACAACAGCTGCTCCCTGGACATGAACAGCATCATTGCTGAGGTCCGC
GCCCAGTCCGAGGCGATCGCCAACCACAGCCGGGCTGAGGCTGAGAGCGCGAACCAGACCCAGTACGAGGAGCTGCAGGT
GCAGGCTGGGAAGCACGGGGACCACCTGCGGCGCACGAAGAGAGAGATGTCCGACAGGAACCGGAACATCAGCCAGCTCC
AGAATGAGATTGAAGCTCTCAAAGGCCAGAGGGATGCCCTGGAGGCCTCCACCTGAGATGACAAGCAGCGTGGGGTGCTG
GCCCTTAAGAATGCTGAGACCAAGCTGCCCAGCTAGAGGCTGCCCTGCGTCAGGCCAAGCGGGACATGGCTCAGCAGCTC
CGTGTATACCAGGATCTGATGAATATCAAGCTGGCCCTGGACACGGAGATCGCCGCCTGCCACAAGGTGCTGGAGGGCGA
GGAGAGCTGGCTGGAGTCGGGGATGCAGAACATGAATATCCACGCGAAGACCACCAGCGGCTACTCAGGTGGCCTGAGCT
CCGCCTATGGGGGCCTCACAAGCCCTGGCCTCAGCTATGGTCTGAGCTCCTTCCAGACCGGCTTTGGCTCTGGTGGGGGC
TCCAGCTCCTTCAGCCGCACCAGCTCCAGGGCTGTGGTTGTGAAGAAGATTGAGACCCGAGAAGGGAAGCTGCTGTCTGA
GTCCTTTGATGTCCTACCCAAG

ORF - retro_ogar_2004 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.67 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalMSIRVTQKSYKVSTSAPRAFSSRSYSSGPGARISSSSFSRVGSGSFRSGLSTGLGLGGGYAGAGGMGGIT
M.IRVTQKSY..STS...AFSS.SYSSGPG.RISSSSFSRVGSGSF.SGL.T.LGLGGGYAGA.GMGGIT
RetrocopyMYIRVTQKSYQESTSTSWAFSSCSYSSGPGVRISSSSFSRVGSGSFLSGLGTSLGLGGGYAGARGMGGIT
ParentalAVTVNQSLLSPLNLEVDPNIQAVRTQEKEEIKTLNNKFASFIDKVRFLEQQNKMLETKWNLLQQQKTARS
AVTVNQSLLSPLNLEVDPNIQAV.TQEKEEIKTLNNKF..FIDKV.FLEQQNKMLETKWNLLQQQ.TARS
RetrocopyAVTVNQSLLSPLNLEVDPNIQAVHTQEKEEIKTLNNKFDTFIDKVCFLEQQNKMLETKWNLLQQQ-TARS
ParentalNMDSMFESYINNLRR-QLDTLGQEKLKLEAELGNMQG-LVEDFKNKYEEEINKRTEMENEF-VLIKKDVD
NMDS..ES.IN.L...Q.DTLGQ..L.LEAE..N.QG.LVEDFK..YEE.INKRTEMEN.F..LIKKDVD
RetrocopyNMDSLCESCINSLWD<QVDTLGQGRLTLEAEGSNVQG<LVEDFKS*YEE-INKRTEMENDF<FLIKKDVD
ParentalEA-YMNKVELESRLDGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEI
EA.Y.N.VELES.L.GLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNS.SLDM.SIIAEVRAQ.E.I
RetrocopyEA<YTNQVELESHLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSCSLDMNSIIAEVRAQSEAI
ParentalANRSRAEAESVYLTKYEELQVQAGKHGDDLRRTKTEISDMNRNISRLQNEIEALKGQRAALEASIADAEQ
AN.SRAEAES...T.YEELQVQAGKHGD.LRRTK.E.SD.NRNIS.LQNEIEALKGQR.ALEAS..D..Q
RetrocopyANHSRAEAESANQTQYEELQVQAGKHGDHLRRTKREMSDRNRNISQLQNEIEALKGQRDALEAST*DDKQ
ParentalRGELALKDANAKL-AQLEAALRQAKQDMAQQLREYQDLMNVKLALDVEIATYRKLLEGEESRLESGMQNM
RG.LALK.A..KL.AQLEAALRQAK.DMAQQLR.YQDLMN.KLALD.EIA...K.LEGEES.LESGMQNM
RetrocopyRGVLALKNAETKL<AQLEAALRQAKRDMAQQLRVYQDLMNIKLALDTEIAACHKVLEGEESWLESGMQNM
ParentalSIHTKTTSGYSGGLSSAYGGLTSPGLSYGLSSFQTGFGSGGGSSSFSRTSSRAVVVKKIETRDGKLVSES
.IH.KTTSGYSGGLSSAYGGLTSPGLSYGLSSFQTGFGSGGGSSSFSRTSSRAVVVKKIETR.GKL.SES
RetrocopyNIHAKTTSGYSGGLSSAYGGLTSPGLSYGLSSFQTGFGSGGGSSSFSRTSSRAVVVKKIETREGKLLSES
ParentalSDVLPK
.DVLPK
RetrocopyFDVLPK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2004 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 151 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000071992 retrocopies
Callithrix jacchus ENSCJAG000000181473 retrocopies
Cavia porcellus ENSCPOG000000026155 retrocopies
Dasypus novemcinctus ENSDNOG000000074003 retrocopies
Felis catus ENSFCAG000000002982 retrocopies
Homo sapiens ENSG0000017042128 retrocopies
Gorilla gorilla ENSGGOG0000001467318 retrocopies
Macaca mulatta ENSMMUG0000000216322 retrocopies
Mustela putorius furoENSMPUG000000064417 retrocopies
Mus musculus ENSMUSG000000493821 retrocopy
Nomascus leucogenys ENSNLEG000000177338 retrocopies
Oryctolagus cuniculus ENSOCUG000000069451 retrocopy
Otolemur garnettii ENSOGAG00000011740 16 retrocopies
Pongo abelii ENSPPYG0000000456231 retrocopies
Pteropus vampyrus ENSPVAG000000093603 retrocopies
Rattus norvegicus ENSRNOG000000097791 retrocopy



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