RetrogeneDB ID: | retro_mmul_1855 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:126737004..126738452(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022637 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 98.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGGYGGASGMGGITAVTVNQ |
MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGG.YGGAS.MGGIT.VTVNQ | |
Retrocopy | MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSFRGGLGGRYGGASRMGGITVVTVNQ |
Parental | SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF |
SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF | |
Retrocopy | SLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMF |
Parental | ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL |
ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL | |
Retrocopy | ESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVEL |
Parental | ESRLEGLTDEINFLRQLYEEEIRELQS-QISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAE |
ESRLEGLTDEINFLRQLYEEEIRELQS.QISDTSVVLS.DNSRSLDMDSIIAEVKAQYEEIANRSRAEAE | |
Retrocopy | ESRLEGLTDEINFLRQLYEEEIRELQS<QISDTSVVLSLDNSRSLDMDSIIAEVKAQYEEIANRSRAEAE |
Parental | SMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDA |
SMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDA | |
Retrocopy | SMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDA |
Parental | NAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGY |
NAKLSELEAALQ.AKQDMAR.LREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGY | |
Retrocopy | NAKLSELEAALQQAKQDMARRLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGY |
Parental | AGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK |
.GGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFS.TSSSRAVVVKKIETRDGKLVSESSDVLPK | |
Retrocopy | GGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSSTSSSRAVVVKKIETRDGKLVSESSDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .04 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |