RetrogeneDB ID: | retro_mmus_2905 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:23357124..23358136(+) | ||
Located in intron of: | ENSMUSG00000045693 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Krt8 | ||
Ensembl ID: | ENSMUSG00000049382 | ||
Aliases: | Krt8, AA960620, AL022697, AU019895, Card2, EndoA, K8, Krt-2.8, Krt2-8 | ||
Description: | keratin 8 [Source:MGI Symbol;Acc:MGI:96705] |
Percent Identity: | 97.04 % |
Parental protein coverage: | 68.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSIRVTQKSYKMSTSGPRAFSSRSFTSGPGARISSSSFSRVGSSSSSFRGSMGTGVGLGGFGGAGVGGIT |
MSIRVTQKSYKMSTSGPRAFSSRSFTSGPGARISSSSFSRVGSSSSSFRGS..TGVGLGGFGGAGVGGIT | |
Retrocopy | MSIRVTQKSYKMSTSGPRAFSSRSFTSGPGARISSSSFSRVGSSSSSFRGSLDTGVGLGGFGGAGVGGIT |
Parental | AVTVNQSLLSPLKLEVDPNIQAVRTQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTSRS |
AVTVNQSLLS.LKLEVDPNIQAVRTQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTSRS | |
Retrocopy | AVTVNQSLLSLLKLEVDPNIQAVRTQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTSRS |
Parental | NMDNMFESYINNLRRQLEALGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAY |
NMDNMFESYINNLRRQLEALGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAY | |
Retrocopy | NMDNMFESYINNLRRQLEALGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAY |
Parental | MNKVELESRLEGLTDEINFLRQIHEEEIRELQSQISDTSVVLSMDNSRSLDMDGIIAEVRAQYEDIANRS |
MNKVELESRLEGLTDEINFLRQI.EEEIRELQSQISDTSVVLSMDNSRSLDMDGIIAEVRAQYEDIANRS | |
Retrocopy | MNKVELESRLEGLTDEINFLRQILEEEIRELQSQISDTSVVLSMDNSRSLDMDGIIAEVRAQYEDIANRS |
Parental | RAEAETMYQIKYEELQTLAGKHGDDLRRTKTEIS-EMNRNINRLQAEIEALKGQRASL |
RAEAETMYQIK.EELQTLAGKHGD.L.RTKTEIS.EMNRNINRLQAEIEALKG.R.SL | |
Retrocopy | RAEAETMYQIKFEELQTLAGKHGDELHRTKTEIS>EMNRNINRLQAEIEALKGRRPSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .17 RPM |
SRP007412_heart | 0 .03 RPM | 1 .15 RPM |
SRP007412_kidney | 0 .31 RPM | 31 .24 RPM |
SRP007412_liver | 0 .55 RPM | 90 .80 RPM |
SRP007412_testis | 0 .09 RPM | 7 .00 RPM |