RetrogeneDB ID: | retro_dnov_1267 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_172505:3288..4085(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSDNOG00000007400 | ||
Aliases: | None | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 54.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSTRVTQKSFKVSTSGPRTFSSRSYTSGPSSRIKFSTLSRVGSSGFRGSMGAGYG---GAGSVG---TIT |
MSTRVTQKSFKVSTSGPRTFSSRSYTSGPSSRIKFSTLSRVGSSGFRGSMGAG.G...G.G..G...TIT | |
Retrocopy | MSTRVTQKSFKVSTSGPRTFSSRSYTSGPSSRIKFSTLSRVGSSGFRGSMGAGLGLGLGYGGAGSVGTIT |
Parental | AVTLNQSLLNPVKLMDTNDLQAVRMQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWR-LQQQQKTSR |
AVTLNQSLLNPVKLMDTNDLQAVRMQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWR.LQQQQKTSR | |
Retrocopy | AVTLNQSLLNPVKLMDTNDLQAVRMQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWRLLQQQQKTSR |
Parental | SDMDSLFESYISNLRRQLEGLGQEKLKLEAELGNMQGLVEDFKNKYEEEINKRTDMENEFVLIKKDVDEA |
SDMDSLFESYISNLRRQLEGLGQEKLKLEAELGNMQGLVEDFKNKYEEEINKRTDMENEFVLIKKDVDEA | |
Retrocopy | SDMDSLFESYISNLRRQLEGLGQEKLKLEAELGNMQGLVEDFKNKYEEEINKRTDMENEFVLIKKDVDEA |
Parental | YMNKVELESRLEGLTEEINFLRHLYEAELAELQ-AQISDTSVVLSMDNSRSLDLDGI |
YMNKVELESRLEGLTEEINFLRHLYEAELAELQ.AQISDTSVVLSMDNSRSLDLDGI | |
Retrocopy | YMNKVELESRLEGLTEEINFLRHLYEAELAELQ<AQISDTSVVLSMDNSRSLDLDGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 295 .59 RPM | 2618 .71 RPM |
SRP012922_cerebellum | 0 .27 RPM | 1 .24 RPM |
SRP012922_heart | 3 .02 RPM | 28 .31 RPM |
SRP012922_kidney | 6 .30 RPM | 101 .58 RPM |
SRP012922_liver | 39 .32 RPM | 367 .98 RPM |
SRP012922_lung | 21 .38 RPM | 266 .05 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 0 .87 RPM |
SRP012922_spleen | 1 .49 RPM | 13 .28 RPM |