RetrogeneDB ID: | retro_mmul_2137 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:27296279..27297296(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000009836 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 78.61 % |
Parental protein coverage: | 69.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ARISSSSFSRVGSSSFRGGLGGGYG-GAS-GMGGITAVTVNQSLLSPLNLEVDPNIQAVRTQEKEQIKTL |
...SSSSF..V...S...GL.GGY..GAS..MGGITA.TVNQ.LLSPLNLE.DPN.QA..TQEKE..KTL | |
Retrocopy | SQVSSSSFRDVLGTSM--GLCGGYE<GAS<RMGGITAITVNQNLLSPLNLELDPNMQATDTQEKE*TKTL |
Parental | NNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNM--DNMFESYINNLRRQLETLGQEKLKLEAELG |
N..FASF.DKVRFLEQQNKM.ETKWS.LQQQKT..SN...DN..ESYINNL...LETLGQEKLKLEAELG | |
Retrocopy | N-MFASFVDKVRFLEQQNKMPETKWSFLQQQKTVWSNLFSDNVLESYINNLLWLLETLGQEKLKLEAELG |
Parental | NMQGL-VEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIREL |
NMQGL..EDFK.KYEDEINK.TEME.EFVL.KK.VDEAYMNK.ELE..LEGLTDEI.FLRQLYEEEI.EL | |
Retrocopy | NMQGL<LEDFKKKYEDEINKLTEMEDEFVLVKKAVDEAYMNKGELEFHLEGLTDEISFLRQLYEEEIPEL |
Parental | QSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKT |
QSQI.DTSVVLSMDNS.SLDMDSIIAEVKAQYEEIAN.SRAEAE.MYQIKYEELQ.LAGKH.DD.RRTKT | |
Retrocopy | QSQILDTSVVLSMDNSSSLDMDSIIAEVKAQYEEIANCSRAEAEIMYQIKYEELQTLAGKHWDDRRRTKT |
Parental | EISEMNRNISRLQAEIEGL---KGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMA |
.I.EMNRNIS.LQAE.EGL.....QRASLE.AIAD.EQRGELA.KDANAKLSELEAA.Q.AK.D.A | |
Retrocopy | KIFEMNRNISWLQAETEGLPQRPEQRASLESAIADTEQRGELAVKDANAKLSELEAAQQWAKHDRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .87 RPM | 0 .94 RPM |