RetrogeneDB ID:

retro_ogar_1874

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873570.1:11768129..11768973(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000011740
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1874
CCCAGTGCCCCCATCAGCTCCACAAGCTTTTCCTGCATGGGCAGCAGCGGCAGTTTCTGGAATGGCCTGGGCACTGGTGT
GGCTCTGGGTGAAGGCTATGCTAGGGCCAGTAGTATGGGGGGCATCACAGCTGTCATGGTGAGCCAGAGCCTGCTGAGAC
CCCTTAAGCTGGAGGTGGACACCTGTATCCATGCCATGTGCACTCAGAAGGAGGAAATCAAGACCCTCAACAAGAAGTTT
GCCTCCTTCATTGACAAGGTGCAATTCTTAGAGCAGCAGAACAAGATGTTGGAGACCAAGTGGAGCCTCCTGCAGTAGCA
GAAGATGGTGTGGAGCAACATGGACAGTTTGTTTGAAAGCTACATCAACAACATTTGGTGATAATTGGACACACTGGACC
AGGAGCTGAAGCCGGAGGTGGAGCTTGGCAACATACAGGGGCTGGCAGAAGACTTCAATAATAAGTATGAGGAGACCAAC
AAGTAAGTGTACAGAGATGGAGCATGAATTTGTCCTCATCAAGAAGGCTGTGGATGAAGCGTACATGAACAAGGTGGAGC
TGGAGTCCCACCTGGAATGAGTGACTGATGAGATCAACTTCCTTAGGCATCTGTATAAAGAGGAGATCTGTGACCTGCAG
TCCCAAATCTTGTACATACGTGTGGTCCTGTTCATGGAGAATAGCTGCTTCCTGGACATGGATAATAGCATCATTTAGGT
CCATGCCCAGTAGGAAGGGATTGCCAGCCACAACTGGGCTGAGGCTAAGCGTGTGTACCAGACCGAGTATGGGGAGCTGC
AGTTACTGGCTGGGAAGCATGAGGACGACCTGTGGCACACAAGA

ORF - retro_ogar_1874 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.66 %
Parental protein coverage: 57.43 %
Number of stop codons detected: 6
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPGARISSSSFSRVGS-GSFRSGLSTGLGLGGGYAGAGGMGGITAVTVNQSLLSPLNLEVDPNIQAVRTQE
P.A.ISS.SFS..GS.GSF..GL.TG..LG.GYA.A..MGGITAV.V.QSLL.PL.LEVD..I.A..TQ.
RetrocopyPSAPISSTSFSCMGSSGSFWNGLGTGVALGEGYARASSMGGITAVMVSQSLLRPLKLEVDTCIHAMCTQ-
ParentalKEEIKTLNNKFASFIDKVRFLEQQNKMLETKWNLLQQQKTARSNMDSMFESYINNLRRQLDTLGQEKLKL
KEEIKTLN.KFASFIDKV.FLEQQNKMLETKW.LLQ.QK...SNMDS.FESYINN....LDTL.QE.LK.
RetrocopyKEEIKTLNKKFASFIDKVQFLEQQNKMLETKWSLLQ*QKMVWSNMDSLFESYINNIW**LDTLDQE-LKP
ParentalEAELGNMQGLVEDFKNKYEEE-INKRTEMENEFVLIKKDVDEAYMNKVELESRLDGLTDEINFLRQLYEE
E.ELGN.QGL.EDF.NKYEE....K.TEME.EFVLIKK.VDEAYMNKVELES.L...TDEINFLR.LY.E
RetrocopyEVELGNIQGLAEDFNNKYEET>TSKCTEMEHEFVLIKKAVDEAYMNKVELESHLE*VTDEINFLRHLYKE
ParentalEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEIANRSRAEAESVYLTKYEELQVQAGKHGDDL
EI..LQSQI....VVL.M.NS..LDMD..I..V.AQ.E.IA....AEA..VY.T.Y.ELQ..AGKH.DDL
RetrocopyEICDLQSQILYIRVVLFMENSCFLDMDNSII*VHAQ*EGIASHNWAEAKRVYQTEYGELQLLAGKHEDDL
ParentalRRTK
..T.
RetrocopyWHTR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1874 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 151 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000071992 retrocopies
Callithrix jacchus ENSCJAG000000181473 retrocopies
Cavia porcellus ENSCPOG000000026155 retrocopies
Dasypus novemcinctus ENSDNOG000000074003 retrocopies
Felis catus ENSFCAG000000002982 retrocopies
Homo sapiens ENSG0000017042128 retrocopies
Gorilla gorilla ENSGGOG0000001467318 retrocopies
Macaca mulatta ENSMMUG0000000216322 retrocopies
Mustela putorius furoENSMPUG000000064417 retrocopies
Mus musculus ENSMUSG000000493821 retrocopy
Nomascus leucogenys ENSNLEG000000177338 retrocopies
Oryctolagus cuniculus ENSOCUG000000069451 retrocopy
Otolemur garnettii ENSOGAG00000011740 16 retrocopies
Pongo abelii ENSPPYG0000000456231 retrocopies
Pteropus vampyrus ENSPVAG000000093603 retrocopies
Rattus norvegicus ENSRNOG000000097791 retrocopy



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