RetrogeneDB ID: | retro_pabe_605 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:67840820..67841810(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000002403 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468F2127 | ||
Ensembl ID: | ENSPPYG00000004562 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365] |
Percent Identity: | 95.45 % |
Parental protein coverage: | 74.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINF |
LGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEM.NEFVLIKKDVDE.YM.KVEL.S.LEGLTDEINF | |
Retrocopy | LGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMDNEFVLIKKDVDEVYMSKVELKSCLEGLTDEINF |
Parental | LRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLA |
LRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYE.IANRS.AEAESMYQIKYEELQSLA | |
Retrocopy | LRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSQAEAESMYQIKYEELQSLA |
Parental | GKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRA |
GKHGDDLRRTKTEISEMNRNISRLQAEIEGLK.QRASLEAAIADA.QRGELAIKDANAKLS.LEAALQ.A | |
Retrocopy | GKHGDDLRRTKTEISEMNRNISRLQAEIEGLKLQRASLEAAIADAKQRGELAIKDANAKLSGLEAALQPA |
Parental | KQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYAGGLSSAYGGLTSP |
KQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLE.GMQNMSIHTKTTSGYA.GLSSAYGGLTSP | |
Retrocopy | KQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLECGMQNMSIHTKTTSGYADGLSSAYGGLTSP |
Parental | GLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDLLPK |
GLSYGLGSSFGSGAGSSSFSRTS.SRAVVVKKIETRDGKLVSESSD.LPK | |
Retrocopy | GLSYGLGSSFGSGAGSSSFSRTSFSRAVVVKKIETRDGKLVSESSDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .12 RPM |
SRP007412_heart | 0 .03 RPM | 23 .57 RPM |
SRP007412_kidney | 0 .07 RPM | 106 .83 RPM |
SRP007412_liver | 0 .06 RPM | 163 .17 RPM |