RetrogeneDB ID: | retro_mmul_2546 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:150557883..150558621(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 87.85 % |
Parental protein coverage: | 51.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETL |
QA..TQEKEQIKTL..K.ASFIDKV.FL.QQNKMLETKWSLLQQQ..ARSNMDN.FESYINNLR.QLETL | |
Retrocopy | QAMHTQEKEQIKTLS-KYASFIDKVWFLQQQNKMLETKWSLLQQQEMARSNMDNLFESYINNLRQQLETL |
Parental | GQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFL |
GQEKLKLE.ELGN.QGLVEDFKN..EDEINK.TEM.NEFVLIKKDVDEAY.NKVE.ESRLEGLTD.INFL | |
Retrocopy | GQEKLKLETELGNIQGLVEDFKNENEDEINKHTEMANEFVLIKKDVDEAYVNKVEWESRLEGLTDKINFL |
Parental | RQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAEAESMYQIKYEELQSLAG |
RQLYEEEI.EL.SQISDTSVVLSMDNS.SLDM.SIIAEVKAQ.EEIANRS.AEAESMYQ.KYEELQSLAG | |
Retrocopy | RQLYEEEIQELHSQISDTSVVLSMDNSCSLDMESIIAEVKAQFEEIANRSLAEAESMYQVKYEELQSLAG |
Parental | KHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASL |
K.GDDLRRTKTEISEMN.NISRLQAE.EGLKGQRASL | |
Retrocopy | KPGDDLRRTKTEISEMN*NISRLQAETEGLKGQRASL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4775 |
Pongo abelii | retro_pabe_3716 |