RetrogeneDB ID: | retro_pabe_701 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:65996308..65997591(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468F2127 | ||
Ensembl ID: | ENSPPYG00000004562 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365] |
Percent Identity: | 85.68 % |
Parental protein coverage: | 96.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GGYGGS-GMGGITAVTVNQSL-SPV-LEVDPNI-AVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLET |
GGYGGS.GMGGIT..TVNQSL.SP..LEVDPN..A.RTQEK.QIKTLN..FASFIDKVRFL.Q.NKMLET | |
Retrocopy | GGYGGSSGMGGITTDTVNQSLLSPLNLEVDPNNQAMRTQEKGQIKTLNS*FASFIDKVRFLKQHNKMLET |
Parental | KWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMEN |
KWSLLQQQKTARSN.DNMFESYINNLR.QL..LGQEKLK....LGN.QGL.E.FKNKYEDEINKR.EMEN | |
Retrocopy | KWSLLQQQKTARSNRDNMFESYINNLRWQLDILGQEKLK----LGNRQGLMENFKNKYEDEINKRAEMEN |
Parental | EFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIA |
EFVLIKK.VDEA.MNKVELES.LEGLTDEINFLRQLYEEEI.ELQSQISDTSVV.SMD.SRSLDMD.IIA | |
Retrocopy | EFVLIKKVVDEANMNKVELESLLEGLTDEINFLRQLYEEEIPELQSQISDTSVVPSMDSSRSLDMDNIIA |
Parental | EVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRT-KTEISEMNRNISRLQAEIEGLKGQRAS |
EVKAQY..I.NRSRAEAESM.QIKYEELQ.LAGK.G.D..RT.KTEI..MN.NISRLQAEIEGLKGQRAS | |
Retrocopy | EVKAQYKEISNRSRAEAESMHQIKYEELQTLAGKQGGDPQRT<KTEICKMNWNISRLQAEIEGLKGQRAS |
Parental | LEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEES |
LEAAIADAEQRGELAIKDANAKLS.LEA.LQRAKQ.MA.QLR.YQELM.VKLALDIEIATYRKLLEGEES | |
Retrocopy | LEAAIADAEQRGELAIKDANAKLS*LEASLQRAKQNMA*QLRGYQELMKVKLALDIEIATYRKLLEGEES |
Parental | RLESGMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRD |
RLESGMQNMSIHTKTTS.YAGGLSSAYG.L.SPGLSYGLGSSFGS.AGSSSFS.TSS.RA.VVKKIET.. | |
Retrocopy | RLESGMQNMSIHTKTTSVYAGGLSSAYGDLASPGLSYGLGSSFGSDAGSSSFSHTSSTRAMVVKKIETHE |
Parental | GKLVSESSDLLPK |
GKLVSESSD.LPK | |
Retrocopy | GKLVSESSDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .12 RPM |
SRP007412_heart | 0 .00 RPM | 23 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 106 .83 RPM |
SRP007412_liver | 0 .00 RPM | 163 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_844 |
Gorilla gorilla | retro_ggor_691 |
Macaca mulatta | retro_mmul_1069 |