Parental gene:

MMU.3111, ENSMMUG00000002163

Aliases:None
Description:keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:49965207..49973024(-)


>ENSMMUG00000002163
ATGTCCATCAGGGTGACCCAGAAGTCCTACAAGGTGTCCACCTCTGGCCCCCGGGCCTTCAGCAGCCGCTCCTACACGAG
TGGGCCCGGTGCTCGCATCAGCTCCTCGAGCTTCTCCCGAGTGGGAAGCAGCAGCTTTCGGGGTGGCCTGGGCGGCGGCT
ATGGTGGGGCCAGCGGCATGGGAGGCATCACCGCAGTCACGGTCAACCAGAGCCTGCTGAGTCCCCTTAACCTGGAGGTG
GACCCCAACATCCAGGCCGTGCGCACCCAGGAGAAGGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATAGA
CAAGGTACGGTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAGACGGCTCGGA
GCAACATGGACAACATGTTCGAGAGTTATATCAACAACCTTAGGCGGCAGCTGGAGACTCTGGGCCAGGAGAAGCTGAAG
CTGGAGGCAGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTATGAGGATGAGATCAATAAACGTAC
AGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCT
TGGAAGGGCTGACTGATGAGATCAACTTCCTCAGGCAGCTGTATGAAGAGGAGATCCGGGAGCTGCAGTCCCAGATCTCG
GACACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACATGGACAGCATCATCGCTGAGGTCAAGGCACAGTA
CGAGGAGATCGCCAACCGCAGCCGGGCTGAGGCTGAGAGCATGTACCAGATCAAGTATGAGGAGCTGCAGAGCCTGGCTG
GGAAGCACGGGGATGACCTGCGGCGCACCAAGACTGAGATCTCCGAGATGAACCGGAACATCAGCCGGCTTCAGGCTGAG
ATTGAGGGCCTCAAAGGCCAGAGGGCTTCCCTGGAGGCCGCCATTGCAGATGCCGAGCAGCGTGGAGAGCTGGCCATTAA
GGATGCCAATGCCAAGTTGTCCGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGCAAGACATGGCGCGGCAGCTGCGTGAGT
ACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGC
CGGCTGGAGTCCGGGATGCAGAACATGAGTATTCATACGAAGACCACTAGCGGCTATGCAGGTGGTCTGAGCTCGGCCTA
TGGGGGCCTCACAAGCCCTGGCCTCAGCTACGGCCTGGGCTCCAGCTTTGGCTCTGGCGCGGGCTCCAGCTCCTTCAGCC
GCACCAGCTCCTCCAGGGCCGTGGTTGTGAAGAAGATCGAGACACGCGATGGGAAGCTGGTGTCCGAGTCCTCTGACGTC
CTGCCCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .24 RPM
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .06 RPM
SRP007412_heart 8 .24 RPM
SRP007412_kidney 22 .18 RPM
SRP007412_liver 33 .41 RPM
SRP007412_testis 0 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007199 ortholog_many2many 2 retrogenes
retro_cfam_1036, retro_cfam_1590,
Callithrix jacchus ENSCJAG00000018147 possible_ortholog 3 retrogenes
retro_cjac_124, retro_cjac_167, retro_cjac_216,
Cavia porcellus ENSCPOG00000002615 ortholog_many2many 5 retrogenes
retro_cpor_1269, retro_cpor_1459, retro_cpor_233, retro_cpor_302, retro_cpor_516,
Dasypus novemcinctus ENSDNOG00000007400 ortholog_one2many 3 retrogenes
retro_dnov_1267, retro_dnov_1886, retro_dnov_2358,
Felis catus ENSFCAG00000000298 ortholog_many2many 2 retrogenes
retro_fcat_1142, retro_fcat_891,
Homo sapiens ENSG00000170421 ortholog_one2many 28 retrogenes
retro_hsap_1012, retro_hsap_1024, retro_hsap_1324, retro_hsap_1513, retro_hsap_1557, retro_hsap_1599, retro_hsap_169, retro_hsap_1708, retro_hsap_235, retro_hsap_2354, retro_hsap_2669, retro_hsap_2731, retro_hsap_2768, retro_hsap_2797, retro_hsap_2842, retro_hsap_3069, retro_hsap_3359, retro_hsap_3379, retro_hsap_3433, retro_hsap_371, retro_hsap_3963, retro_hsap_4203, retro_hsap_4688, retro_hsap_4691, retro_hsap_4775, retro_hsap_644, retro_hsap_844, retro_hsap_932,
Gorilla gorilla ENSGGOG00000014673 ortholog_many2many 18 retrogenes
retro_ggor_1160, retro_ggor_1787, retro_ggor_1862, retro_ggor_1897, retro_ggor_1900, retro_ggor_2320, retro_ggor_2662, retro_ggor_2913, retro_ggor_2918, retro_ggor_297, retro_ggor_2975, retro_ggor_382, retro_ggor_564, retro_ggor_66, retro_ggor_691, retro_ggor_751, retro_ggor_803, retro_ggor_809,
Mustela putorius furo ENSMPUG00000006441 ortholog_many2many 7 retrogenes
retro_mputfur_1101, retro_mputfur_1208, retro_mputfur_1271, retro_mputfur_1557, retro_mputfur_1587, retro_mputfur_556, retro_mputfur_895,
Mus musculus ENSMUSG00000049382 ortholog_one2many 1 retrogene
retro_mmus_2905,
Nomascus leucogenys ENSNLEG00000017733 ortholog_one2many 8 retrogenes
retro_nleu_1913, retro_nleu_225, retro_nleu_2285, retro_nleu_2421, retro_nleu_2485, retro_nleu_2727, retro_nleu_2787, retro_nleu_672,
Oryctolagus cuniculus ENSOCUG00000006945 ortholog_one2many 1 retrogene
retro_ocun_313,
Otolemur garnettii ENSOGAG00000011740 ortholog_many2many 16 retrogenes
retro_ogar_1076, retro_ogar_1162, retro_ogar_1256, retro_ogar_1572, retro_ogar_1874, retro_ogar_1898, retro_ogar_1952, retro_ogar_2004, retro_ogar_2149, retro_ogar_2177, retro_ogar_2261, retro_ogar_2500, retro_ogar_3198, retro_ogar_3318, retro_ogar_339, retro_ogar_664,
Pongo abelii ENSPPYG00000004562 ortholog_many2many 31 retrogenes
retro_pabe_1102, retro_pabe_1261, retro_pabe_1289, retro_pabe_1460, retro_pabe_1743, retro_pabe_2063, retro_pabe_2077, retro_pabe_2129, retro_pabe_2142, retro_pabe_2214, retro_pabe_2270, retro_pabe_2352, retro_pabe_2544, retro_pabe_2741, retro_pabe_2763, retro_pabe_2787, retro_pabe_2842, retro_pabe_2926, retro_pabe_2943, retro_pabe_3138, retro_pabe_332, retro_pabe_3439, retro_pabe_3644, retro_pabe_3716, retro_pabe_417, retro_pabe_460, retro_pabe_569, retro_pabe_605, retro_pabe_701, retro_pabe_803, retro_pabe_851,
Pteropus vampyrus ENSPVAG00000009360 ortholog_one2many 3 retrogenes
retro_pvam_1299, retro_pvam_1396, retro_pvam_45,
Rattus norvegicus ENSRNOG00000009779 ortholog_one2many 1 retrogene
retro_rnor_807,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_58 92.96 100.00
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2. retro_mmul_289 85.46 57.76
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3. retro_mmul_488 79.01 66.25
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4. retro_mmul_766 95.05 100.00
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5. retro_mmul_816 86.00 51.55
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6. retro_mmul_886 98.14 100.00
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7. retro_mmul_1069 84.25 52.38
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8. retro_mmul_1122 74.09 56.52
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9. retro_mmul_1178 80.87 75.36
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10. retro_mmul_1349 79.05 90.06
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11. retro_mmul_1351 98.55 100.00
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12. retro_mmul_1412 76.25 53.62
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13. retro_mmul_1697 84.78 59.63
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14. retro_mmul_1753 80.34 60.87
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15. retro_mmul_1810 81.51 59.83
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16. retro_mmul_1855 98.14 100.00
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17. retro_mmul_1866 75.26 97.10
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18. retro_mmul_2097 82.01 79.71
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19. retro_mmul_2137 78.61 69.98
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20. retro_mmul_2357 68.40 55.07
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21. retro_mmul_2431 83.55 79.30
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22. retro_mmul_2546 87.85 51.14
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Download FASTA sequences of all ENSMMUG00000002163 retrocopies