RetrogeneDB ID: | retro_rnor_807 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:69062082..69063540(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000027116 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Krt8 | ||
Ensembl ID: | ENSRNOG00000009779 | ||
Aliases: | Krt8, CYKER, Krt2-8 | ||
Description: | Keratin, type II cytoskeletal 8 [Source:UniProtKB/Swiss-Prot;Acc:Q10758] |
Percent Identity: | 92.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSVRVTQKSYKMSTS-GPRAFSSRSFTSGPGARI--SSSSFSRVGSSSSSFRGSLGGFGGAGVGGITAVT |
MSVRVTQKSYKMSTS..PRAFSSRSFTSGPGARI..SS.S..........FRGSLGGFGGAGVGGITAVT | |
Retrocopy | MSVRVTQKSYKMSTS<RPRAFSSRSFTSGPGARISSSSFSRVXXXXXXXXFRGSLGGFGGAGVGGITAVT |
Parental | VNQSLLNPLKLEVDP-NIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQ-KTSRSN |
VNQSLLNPLKLEVDP.NIQAVRTQEKEQIKTLN.KFASFIDKVRFLEQQ.KMLETKWSLLQQQ.KTSRS. | |
Retrocopy | VNQSLLNPLKLEVDP>NIQAVRTQEKEQIKTLNKKFASFIDKVRFLEQQSKMLETKWSLLQQQQKTSRSS |
Parental | MDNMFESYINNLRRQLEALGQEKLKLEVELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYM |
MDNMFESYINNLRRQLEAL.QEKLKL.VELGNMQGLVEDFKNKYEDEI.K.TEMEN.FVLIKKDVDEAYM | |
Retrocopy | MDNMFESYINNLRRQLEALVQEKLKLGVELGNMQGLVEDFKNKYEDEISKHTEMENAFVLIKKDVDEAYM |
Parental | NKVELESRLEGLTDEINFLRQIHEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEIANRSR |
NKVELES.LEGLTDEINFLRQIHEEEI.ELQSQISDTS.VLSMDNSRSL.MDSIIAEVRAQYEEIANRSR | |
Retrocopy | NKVELESHLEGLTDEINFLRQIHEEEICELQSQISDTSGVLSMDNSRSLHMDSIIAEVRAQYEEIANRSR |
Parental | AEAETMYQIKYEELQTLAGKHGDDLRRSKTEISEMNRNISRLQAEIDALKGQRATLEAAIADAEQRGELA |
AEAETMYQIKYEELQTLAGKHGDD..RSKTEISEMN.NISRLQAE.DALKGQRATLEAAIADA.QRGELA | |
Retrocopy | AEAETMYQIKYEELQTLAGKHGDDPHRSKTEISEMNPNISRLQAEMDALKGQRATLEAAIADAQQRGELA |
Parental | VKDANAKLEDLKNALQKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKT |
.KDANAKLEDLKNALQKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESG.QNMSIHTKT | |
Retrocopy | MKDANAKLEDLKNALQKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGTQNMSIHTKT |
Parental | TSGYAGGLSSSYGGLTSPGFSYGMSSFQPGFGSVGGSSTYSRTKAVVVKKIETRDGKLVSESSDIMSK |
TSGYAGGLSSSYGGLTSPGFSYGMSSFQPGFGSVGGSSTYSRTKAVV.KKIETRDGKLV.ESSDIMSK | |
Retrocopy | TSGYAGGLSSSYGGLTSPGFSYGMSSFQPGFGSVGGSSTYSRTKAVVGKKIETRDGKLVAESSDIMSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .44 RPM |
SRP017611_kidney | 0 .07 RPM | 66 .22 RPM |
SRP017611_liver | 0 .27 RPM | 97 .70 RPM |