RetrogeneDB ID: | retro_cpor_233 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_105:1022910..1023763(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002615 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.48 % |
Parental protein coverage: | 61.6 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 8 |
Parental | GGYGGAGGVGGITAVQ-VNQSLLN-PLNLEVDPNIQAVRIQEKEQIKNLNNKFASFIDKVRFLEQQNKML |
GGY..AG.VG.ITA...VNQSLLN...NLE.DP.I......EK.Q...L.NK...FI.K..FL...NK.L | |
Retrocopy | GGYSAAGDVGRITATR<VNQSLLN<SPNLEGDPRIWTAHSEEKIQ---LHNKCTFFINKLWFLKLENK*L |
Parental | ETKWSLLQQQ-KTSRSNMDNMFES-YINNLRRQLDTLGQEKLKLEAELGNMQGMVEDFKNKYEDEINKRT |
E.K.SLLQQQ.....S..D.MF...YINN...QLDTLGQEKL.LE.E.G.MQG.VE.FKNKYEDEI.K.. | |
Retrocopy | EAKHSLLQQQ<NVAWSSRDRMFQA<YINNFQLQLDTLGQEKLPLEGEPGSMQGLVEGFKNKYEDEISKHP |
Parental | EMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQ-SQISDT-SVVLSMDNSR-SL |
.M.NEF.LIKKDV.E.YMN..ELE..LEG....INF.RQ..EEE..E....Q.SDT...VLSMDNS..S. | |
Retrocopy | KMGNEFILIKKDVGEVYMNQAELECHLEG---KINFHRQ*DEEETCEVS*FQFSDT<TLVLSMDNSH<SP |
Parental | DLDGIIAEVKAQYEEIANRSRAEAESM-YQIKYEELQTLAGKHGDDLRRTKSEISEMNRSIS-RLQAEIE |
..D.IIAEVKAQ..EI.N.S.AE...M..QIK..E.QTL.GK.G........E.S.MN.SI...LQ.E.E | |
Retrocopy | NGDNIIAEVKAQSKEITNCSQAETKNM<VQIKEKEQQTLDGKYGNHTSCARTETSKMNCSIC<LLQEETE |
Parental | ALKGQRAALEAAIADAEQRGE |
ALKG.R...EA..AD.E..G. | |
Retrocopy | ALKG*RTSPEATTADIERCGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .37 RPM |
SRP017611_kidney | 0 .10 RPM | 147 .71 RPM |
SRP017611_liver | 0 .00 RPM | 168 .80 RPM |
SRP040447_lung | 0 .00 RPM | 155 .44 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .90 RPM |