RetrogeneDB ID: | retro_mmul_2357 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:92083447..92084238(-) | ||
Located in intron of: | ENSMMUG00000016062 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 68.4 % |
Parental protein coverage: | 55.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | GLGGGYGGASG-MGGITAVTVNQSLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVR-FLEQQN |
GLGG.YGGAS...GG..A..VNQSLLSPL...VD.NIQA..TQEK.QI..LN.KFASFI.KV...LEQQ. | |
Retrocopy | GLGGDYGGASD>LGGLIAIVVNQSLLSPLKPKVDCNIQAMYTQEKGQINILN-KFASFINKVY<LLEQQQ |
Parental | KMLET-KWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINK |
KML.T...SLLQ.QKTA.S.MDNM.ESYINNL.RQ..TL.QEKLKLE.ELGNMQGL.....NKY....NK | |
Retrocopy | KMLKT<QLSLLQ*QKTAQSYMDNMLESYINNLWRQWDTLDQEKLKLETELGNMQGLLKALNNKYKGD-NK |
Parental | RTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLD |
..E..NEFVLIKKDVDE...N.VE.ES.LE..TDEINFL.Q.Y.E.I.EL.SQIS..SVVLSMDNS.SL. | |
Retrocopy | HREI*NEFVLIKKDVDETCINEVEQESLLEAMTDEINFLKQMYKEGICELHSQISGISVVLSMDNSHSLE |
Parental | MDSIIAEVKAQYEEIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNI |
MDSII..VK.QYE.I.N...A.AE.MYQIKYEELQ.LAGKHGD.L..TK..I.EMN.NI | |
Retrocopy | MDSIITDVKTQYEDIVNHNLAKAEHMYQIKYEELQMLAGKHGDELCHTKMDITEMNCNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .06 RPM | 0 .06 RPM |
SRP007412_heart | 0 .12 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |