RetrogeneDB ID: | retro_pabe_2129 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:73531253..73532596(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468F2127 | ||
Ensembl ID: | ENSPPYG00000004562 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365] |
Percent Identity: | 87.11 % |
Parental protein coverage: | 99.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SSSSSRV-SSSF--GLGG-YGG-SGMGGITAVTVNQSL-SPV-LEVDPNI-AVRTQEKEQIKTLNNKFAS |
SSS.SRV.SSSF..GLGG.YGG.SGMGGI..VTVNQSL.SP..LEVDPNI.AV.TQ.KEQIKTLNNKFAS | |
Retrocopy | SSSFSRVGSSSFRGGLGGGYGGASGMGGIITVTVNQSLLSPLKLEVDPNIQAVHTQKKEQIKTLNNKFAS |
Parental | FIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVED |
FI.KV.FLEQQNKMLETKWSLLQQQKTARSNMDN.F.SY.NNLR.QLETLGQEKLKLEAELGNMQ.LVED | |
Retrocopy | FICKVQFLEQQNKMLETKWSLLQQQKTARSNMDNIFQSYVNNLRQQLETLGQEKLKLEAELGNMQRLVED |
Parental | FKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSV |
FKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEE.I.ELQSQISDTSV | |
Retrocopy | FKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEDIPELQSQISDTSV |
Parental | VLSMDNSRSLDMDSIIAEVK-AQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRN |
VLSMDNS.SLDMDSII.EVK.AQYE.I.NR...EAESMYQIKYE.LQ.LAGKHGDDL..TKTEIS.MNRN | |
Retrocopy | VLSMDNSHSLDMDSIINEVK<AQYE-ITNRRWVEAESMYQIKYE*LQTLAGKHGDDLQHTKTEISAMNRN |
Parental | ISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLA |
IS.L.AEIEGLKGQRASLEAAI.DAEQRG.LA.KDANAKLSELEAALQ.AKQDM..QL..YQELMNVKLA | |
Retrocopy | ISWLRAEIEGLKGQRASLEAAISDAEQRGGLAVKDANAKLSELEAALQQAKQDMVQQLH*YQELMNVKLA |
Parental | LDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFS |
LDIEI.TYRKLLEGEES.LESGMQNMSIHTKTTS.YAGGLSSAYG.LTSPGLSYGLGSSFGSG..SSSFS | |
Retrocopy | LDIEITTYRKLLEGEESWLESGMQNMSIHTKTTSSYAGGLSSAYGDLTSPGLSYGLGSSFGSGVDSSSFS |
Parental | RTSSSRAVVVKKIETRDGKLVSESSDLLPK |
.TS..RAVVVKKIETRDG.LVSESSD..PK | |
Retrocopy | CTSYTRAVVVKKIETRDGTLVSESSDVQPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .12 RPM |
SRP007412_heart | 0 .03 RPM | 23 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 106 .83 RPM |
SRP007412_liver | 0 .09 RPM | 163 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2354 |
Gorilla gorilla | retro_ggor_1787 |