RetrogeneDB ID: | retro_pabe_2214 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:54424038..54425143(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468F2127 | ||
Ensembl ID: | ENSPPYG00000004562 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365] |
Percent Identity: | 79.03 % |
Parental protein coverage: | 81.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SSSSRV-SSSF----GLGGYGGSGMGGITAVTVNQSL-SPV-LEVDPNI-AVRTQEKEQIKTLNNKFASF |
SS.SRV.SSSF....G.G..G.S..GGITAVTVNQSL.SP..L.VDPNI.A..TQEKEQIKTLNNKFASF | |
Retrocopy | SSFSRVGSSSFWGGLGRGCDGASSKGGITAVTVNQSLLSPLNLQVDPNIQAMCTQEKEQIKTLNNKFASF |
Parental | IDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDF |
IDKV..LEQQNKMLETKWSLLQQQK...SNMD.M..SYINNL.RQLETLGQEKLKLEAELG.MQGLVE.F | |
Retrocopy | IDKVWLLEQQNKMLETKWSLLQQQKMTLSNMDSMLQSYINNLQRQLETLGQEKLKLEAELGSMQGLVEGF |
Parental | KNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVV |
KNKY.D.INKRTEMENEFVLIKK.VD.AYMNKVELES.LEGLTDEI.FLRQLYEEEI.EL.S.I.DTSVV | |
Retrocopy | KNKYKDKINKRTEMENEFVLIKKVVDDAYMNKVELESHLEGLTDEIHFLRQLYEEEIWEL-S*ILDTSVV |
Parental | LSMDNSRSLDMDSIIAEVKAQYEDIAN-RSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNI |
LSMDNS.SLDMDSII.EVKAQYE.IAN.RS.A.AESMYQIKYEEL..LAGKH.DDL..TK.EISEMN.NI | |
Retrocopy | LSMDNSCSLDMDSIITEVKAQYEEIAN<RSQAKAESMYQIKYEEL*TLAGKHEDDLCHTKMEISEMNWNI |
Parental | SRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELM-NVKLA |
S.LQAE.EGLKGQRASLEA.I.DAEQ.GELA.K.AN.KL.EL...LQ.A.QDM..QL.E.QELM....LA | |
Retrocopy | SWLQAEREGLKGQRASLEATITDAEQHGELAVKNANTKLYELGPTLQWAEQDMVQQLHECQELM<EIQLA |
Parental | LDIEIATYRKLLEGEESRLESG |
LDIEIATYRKLLEG.ES.LE.G | |
Retrocopy | LDIEIATYRKLLEGMESWLELG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .12 RPM |
SRP007412_heart | 0 .03 RPM | 23 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 106 .83 RPM |
SRP007412_liver | 0 .00 RPM | 163 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2669 |
Gorilla gorilla | retro_ggor_1862 |