RetrogeneDB ID: | retro_hsap_2797 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:63082052..63083026(-) | ||
Located in intron of: | ENSG00000244342 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000242841 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSG00000170421 | ||
Aliases: | KRT8, CARD2, CK-8, CK8, CYK8, K2C8, K8, KO | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 85.59 % |
Parental protein coverage: | 68.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINF |
LGQEKLKLEAELGNMQ.LVEDFKNKYEDEINKRTEMENEFVLIKKD.DEA.MNKVEL.SRLEGLTDEINF | |
Retrocopy | LGQEKLKLEAELGNMQPLVEDFKNKYEDEINKRTEMENEFVLIKKDADEASMNKVELGSRLEGLTDEINF |
Parental | LRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLA |
L.QLYEEEIRELQSQISDTSVVLSMDNS.SLDMDSIIAEVKAQ.E.IAN.SRAEAESMYQIKYEELQ.LA | |
Retrocopy | LMQLYEEEIRELQSQISDTSVVLSMDNSCSLDMDSIIAEVKAQ*EEIANCSRAEAESMYQIKYEELQTLA |
Parental | GKHGDDLRR-TKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQR |
GKHGDD.RR...TEIS....NIS.LQA.......QRASLEAAI.DAE..G.L..KDANAKLSELEAALQR | |
Retrocopy | GKHGDD-RR>AQTEIS*IYGNISQLQAHVD----QRASLEAAITDAELHGDLVVKDANAKLSELEAALQR |
Parental | AKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHT-KTTSGYAGGLSSAYGGLT |
AKQDMA.QLREYQELMNVKLALDIEIATYRKLLEG.ESRLESGMQN.SIH..KTTSG..G.LSSAYGGLT | |
Retrocopy | AKQDMAWQLREYQELMNVKLALDIEIATYRKLLEGKESRLESGMQNRSIHR<KTTSGGGGVLSSAYGGLT |
Parental | S-PGLSYSLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK |
S.PGLSY.LGSSFGSGAGS.SFSRTSS.RAVVVK.IET.DGKLVSESSD..PK | |
Retrocopy | S<PGLSYGLGSSFGSGAGSPSFSRTSSARAVVVKMIETCDGKLVSESSDIQPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 4 .42 RPM |
bodymap2_brain | 0 .00 RPM | 0 .56 RPM |
bodymap2_breast | 0 .00 RPM | 56 .07 RPM |
bodymap2_colon | 0 .00 RPM | 132 .45 RPM |
bodymap2_heart | 0 .00 RPM | 32 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 197 .95 RPM |
bodymap2_liver | 0 .02 RPM | 168 .59 RPM |
bodymap2_lung | 0 .00 RPM | 176 .67 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 95 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .02 RPM | 29 .77 RPM |
bodymap2_thyroid | 0 .04 RPM | 375 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1894 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |