RetrogeneDB ID: | retro_hsap_4203 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:102067408..102068890(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255815 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSG00000170421 | ||
Aliases: | KRT8, CARD2, CK-8, CK8, CYK8, K2C8, K8, KO | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 84.97 % |
Parental protein coverage: | 97.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GISAWFGPPASTPASTMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISSSSFSRVGSSNFRGGLGGGY |
GIS.W.....S.P.ST.....T........SGP.AFSS..Y.SGPG..ISS.S.SRVGSS.FRGGLGGGY | |
Retrocopy | GISTWL----SLPVSTPA-SITSIRVTQKSSGPWAFSSCTYVSGPGVCISSLSCSRVGSSSFRGGLGGGY |
Parental | GGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWS |
GGASGMGGI.A..VNQSLLSPL.LEVDPNIQAV.TQEKEQIKTLNNKFASFIDKV.FLEQQNK.LETKWS | |
Retrocopy | GGASGMGGIIAIMVNQSLLSPLNLEVDPNIQAVCTQEKEQIKTLNNKFASFIDKVWFLEQQNKVLETKWS |
Parental | LLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFV |
LLQQQK.ARSNMDNM.ESYINNLRRQLETLGQEKLKLEAELGNMQGL.EDFKNKYEDEINK.TE.ENEFV | |
Retrocopy | LLQQQKMARSNMDNMLESYINNLRRQLETLGQEKLKLEAELGNMQGLGEDFKNKYEDEINKHTEVENEFV |
Parental | LIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVK |
LIKKDVDEAYMNK.ELES.LEGLTDEINFLRQLYEEEIRELQSQISD.S.VLSMD.S.S.DMDSII.EVK | |
Retrocopy | LIKKDVDEAYMNKAELESLLEGLTDEINFLRQLYEEEIRELQSQISDMSMVLSMDYSCSRDMDSIIPEVK |
Parental | AQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAA |
.QYE.IAN.SRAEAESMYQIKYEELQ.LAGK.GDDL.RTKTEISEMNRNIS.LQAE.EGLKGQRASLEAA | |
Retrocopy | VQYEEIANCSRAEAESMYQIKYEELQTLAGKYGDDLSRTKTEISEMNRNISWLQAETEGLKGQRASLEAA |
Parental | IADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLES |
I.DAEQRGELA.KDANAKLSELEAALQRAKQDM..QLREYQELMNV.L.LDIEIATYRKLLEGEESRLES | |
Retrocopy | ITDAEQRGELAVKDANAKLSELEAALQRAKQDMMGQLREYQELMNVGLTLDIEIATYRKLLEGEESRLES |
Parental | GMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLV |
GMQN.SIHTKTTS.YAGGLSSAYGGLTSPG..Y.LGSSFGS.AGSSSFSRTSS.RAVVV.KIET.DGKL. | |
Retrocopy | GMQNVSIHTKTTSSYAGGLSSAYGGLTSPGIIYRLGSSFGSAAGSSSFSRTSSTRAVVVRKIETHDGKLE |
Parental | SESSDVLPK |
SESSDVL.K | |
Retrocopy | SESSDVLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .86 RPM |
bodymap2_adrenal | 0 .06 RPM | 4 .42 RPM |
bodymap2_brain | 0 .02 RPM | 0 .56 RPM |
bodymap2_breast | 0 .08 RPM | 56 .07 RPM |
bodymap2_colon | 0 .04 RPM | 132 .45 RPM |
bodymap2_heart | 0 .00 RPM | 32 .09 RPM |
bodymap2_kidney | 0 .62 RPM | 197 .95 RPM |
bodymap2_liver | 0 .15 RPM | 168 .59 RPM |
bodymap2_lung | 0 .00 RPM | 176 .67 RPM |
bodymap2_lymph_node | 0 .35 RPM | 8 .63 RPM |
bodymap2_ovary | 0 .13 RPM | 45 .99 RPM |
bodymap2_prostate | 0 .19 RPM | 95 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .04 RPM | 29 .77 RPM |
bodymap2_thyroid | 0 .04 RPM | 375 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_66 |
Pongo abelii | retro_pabe_3439 |
Macaca mulatta | retro_mmul_1178 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .43 RPM |
CEU_NA11843 | 0 .14 RPM |
CEU_NA11930 | 0 .42 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .24 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .08 RPM |
CEU_NA12873 | 0 .13 RPM |
FIN_HG00183 | 0 .80 RPM |
FIN_HG00277 | 0 .44 RPM |
FIN_HG00315 | 0 .41 RPM |
FIN_HG00321 | 1 .18 RPM |
FIN_HG00328 | 0 .14 RPM |
FIN_HG00338 | 0 .17 RPM |
FIN_HG00349 | 0 .31 RPM |
FIN_HG00375 | 0 .22 RPM |
FIN_HG00377 | 0 .15 RPM |
FIN_HG00378 | 0 .19 RPM |
GBR_HG00099 | 0 .15 RPM |
GBR_HG00111 | 0 .13 RPM |
GBR_HG00114 | 0 .24 RPM |
GBR_HG00119 | 0 .50 RPM |
GBR_HG00131 | 0 .34 RPM |
GBR_HG00133 | 0 .27 RPM |
GBR_HG00134 | 0 .31 RPM |
GBR_HG00137 | 0 .30 RPM |
GBR_HG00142 | 1 .72 RPM |
GBR_HG00143 | 0 .10 RPM |
TSI_NA20512 | 0 .71 RPM |
TSI_NA20513 | 0 .24 RPM |
TSI_NA20518 | 0 .39 RPM |
TSI_NA20532 | 0 .17 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .23 RPM |
TSI_NA20765 | 0 .15 RPM |
TSI_NA20771 | 0 .34 RPM |
TSI_NA20786 | 0 .18 RPM |
TSI_NA20798 | 0 .16 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .21 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .08 RPM |
YRI_NA19213 | 0 .45 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .00 RPM |