RetrogeneDB ID: | retro_hsap_4688 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:58011071..58012564(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235124 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSG00000170421 | ||
Aliases: | KRT8, CARD2, CK-8, CK8, CYK8, K2C8, K8, KO | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 83.8 % |
Parental protein coverage: | 97.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GISAWFGPPASTPASTMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISSSSFSRVGSSNFRGGLGGGY |
GIS.WF.PPASTPASTMSIRVTQKSYKVSTSGP..FSS.SY.SGP...ISS.SFSR.GSS.F.GGLG.GY | |
Retrocopy | GISTWFSPPASTPASTMSIRVTQKSYKVSTSGPWFFSSCSYLSGPSAHISSLSFSRAGSSSFQGGLGRGY |
Parental | GGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWS |
GGASGM..ITAV.VNQSLLSP..LEVD.NIQA..T.EKEQIKTLN.KFASFIDKV.FLEQQNKMLE.KWS | |
Retrocopy | GGASGMEVITAVMVNQSLLSPINLEVDLNIQAMHT*EKEQIKTLN-KFASFIDKVQFLEQQNKMLENKWS |
Parental | LLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFV |
LLQQQK.A.SN.DNMFESYINNLR.QLETLG..KLKLEAELGNMQGLVEDFKNKYEDEINK.TEMENEFV | |
Retrocopy | LLQQQKMAQSNLDNMFESYINNLRWQLETLGRKKLKLEAELGNMQGLVEDFKNKYEDEINKYTEMENEFV |
Parental | LIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVK |
LIKKDVDEAYMNKVELE.RLEG.TDEINFLR.LYE.EIRELQSQI.D.SVVLSMDNS.SLDMDSIIAEVK | |
Retrocopy | LIKKDVDEAYMNKVELEYRLEGPTDEINFLRKLYEQEIRELQSQILDMSVVLSMDNSHSLDMDSIIAEVK |
Parental | AQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRAS-LEA |
.QYE.IANRS.AEAE.MYQ..YEELQ.LAG.HGDDL..TKTEIS..N.NIS.LQAEIEGLKGQRAS.LE. | |
Retrocopy | VQYEEIANRSWAEAERMYQN*YEELQMLAGEHGDDLLSTKTEISTINQNISWLQAEIEGLKGQRAS<LES |
Parental | AIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLE |
.I.D.EQRGEL.IKDANAKLS.LEAALQRAKQDMA.QL.EYQELMN.KLA.DI.I.TYRKLLE.E.S.LE | |
Retrocopy | TITDVEQRGELVIKDANAKLSQLEAALQRAKQDMALQLHEYQELMNFKLAQDIVITTYRKLLESEGSWLE |
Parental | SGMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKL |
SGMQ.MSIH.KTTSGYAG.LSSAYGGLTSP.LSYSLGSSFGSGAGSSSFS.TSS.RA.VVKKIE...GKL | |
Retrocopy | SGMQSMSIHMKTTSGYAGSLSSAYGGLTSPSLSYSLGSSFGSGAGSSSFSHTSSTRAAVVKKIEAQNGKL |
Parental | VSESSDVLPK |
VS.SSDVLPK | |
Retrocopy | VSKSSDVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 4 .42 RPM |
bodymap2_brain | 0 .00 RPM | 0 .56 RPM |
bodymap2_breast | 0 .00 RPM | 56 .07 RPM |
bodymap2_colon | 0 .00 RPM | 132 .45 RPM |
bodymap2_heart | 0 .00 RPM | 32 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 197 .95 RPM |
bodymap2_liver | 0 .02 RPM | 168 .59 RPM |
bodymap2_lung | 0 .00 RPM | 176 .67 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 95 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .00 RPM | 29 .77 RPM |
bodymap2_thyroid | 0 .00 RPM | 375 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_200591 | 1426 libraries | 234 libraries | 90 libraries | 43 libraries | 36 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |