RetrogeneDB ID:

retro_pvam_45

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1120:12186..12957(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KRT8
Ensembl ID:ENSPVAG00000009360
Aliases:None
Description:keratin 8 [Source:HGNC Symbol;Acc:6446]


Retrocopy-Parental alignment summary:






>retro_pvam_45
CTGGCCAGGGGTTACAGTAAGGCTGGGGGTATGGGGAGGATTACAGCTGTCCAAGTGAACCAGAGCTTGTTGAGCCCTCT
GAAGCTGTTTGTGGACCCCAACATCCAGGCCATAGGAACCCAGGAGAAGGAGCAGATCGAGACCCTCAACAAGAAGTTTG
CTTCCTTCATCGACAAGGTACAGAGCCTGGAGCAGCAGAACAAGATTCTGGAGACCAAGTAGAACCTTCTGCAGCAGCAG
AAGACGACTCGCAGCAACATGAACAACGTGTTTGAGAGCTACAACAACAACCTTCCAGGGCAGCTGGACACACTGGCCCA
GGAGAAACTGAGGCTGGAGGCGGAGTATGGCAACATGCAGGGGCTGGTGGAGGACTTGAAGAATAAGTATGAGGATGAGA
TCAACAAGTGCACAGAGATGGAGGATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGTTTACATGGACAAGGTGGAG
CTGGAGTCCCGCCTGGAAGGGCTAACAGATGAGATCAACTTCTGCAAGCAGCTGTATGAAGAGGAGATCCATGAGCTACA
GGCCCAGATCTCCAACACTTCTGTGGTGCTGTCCTTGGATAACAACTGCTCCCTGGATCTGGACGGCGGCATCGCCGAGG
TCAAGGCCCAGTACGAGGAGATTGTTAACTGCAGCCGGGCTGAGGCTGAGACCATGTACCAGATCAAGTATGAGGAGCTG
CAGACATTGGCAGGGAAGCATGGGGATGACCTGTGTCACATGAAGACAGAT

ORF - retro_pvam_45 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.1 %
Parental protein coverage: 53.11 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLGGGYGGAGGAGNITAVQVNQSLLSPLKLEVDPNIQAVRTQEKEQIKTLNNKFANFIDKVRSLEQQNKIL
L..GY..AGG.G.ITAVQVNQSLLSPLKL.VDPNIQA..TQEKEQI.TLN.KFA.FIDKV.SLEQQNKIL
RetrocopyLARGYSKAGGMGRITAVQVNQSLLSPLKLFVDPNIQAIGTQEKEQIETLNKKFASFIDKVQSLEQQNKIL
ParentalETKWNFLQQQKTIRSNMDNMFESYINNLRRQLDTLAQEKLRLEAECGNMQGLVEDLKNKYEDEINKRTEM
ETK.N.LQQQKT.RSNM.N.FESY.NNL..QLDTLAQEKLRLEAE.GNMQGLVEDLKNKYEDEINK.TEM
RetrocopyETK*NLLQQQKTTRSNMNNVFESYNNNLPGQLDTLAQEKLRLEAEYGNMQGLVEDLKNKYEDEINKCTEM
ParentalENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFYRQLYEEEIRELQAQISDTSVVLSMDNNRSLDLDGI
E.EFVLIKKDVDE.YM.KVELESRLEGLTDEINF..QLYEEEI.ELQAQIS.TSVVLS.DNN.SLDLDG.
RetrocopyEDEFVLIKKDVDEVYMDKVELESRLEGLTDEINFCKQLYEEEIHELQAQISNTSVVLSLDNNCSLDLDGG
ParentalIAEVKAQYEDIANRSRAEAETMYQIK-GDLSSLTGKHGDDLRRTKTE
IAEVKAQYE.I.N.SRAEAETMYQIK...L..L.GKHGDDL...KT.
RetrocopyIAEVKAQYEEIVNCSRAEAETMYQIKYEELQTLAGKHGDDLCHMKTD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_45 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 151 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000071992 retrocopies
Callithrix jacchus ENSCJAG000000181473 retrocopies
Cavia porcellus ENSCPOG000000026155 retrocopies
Dasypus novemcinctus ENSDNOG000000074003 retrocopies
Felis catus ENSFCAG000000002982 retrocopies
Homo sapiens ENSG0000017042128 retrocopies
Gorilla gorilla ENSGGOG0000001467318 retrocopies
Macaca mulatta ENSMMUG0000000216322 retrocopies
Mustela putorius furoENSMPUG000000064417 retrocopies
Mus musculus ENSMUSG000000493821 retrocopy
Nomascus leucogenys ENSNLEG000000177338 retrocopies
Oryctolagus cuniculus ENSOCUG000000069451 retrocopy
Otolemur garnettii ENSOGAG0000001174016 retrocopies
Pongo abelii ENSPPYG0000000456231 retrocopies
Pteropus vampyrus ENSPVAG00000009360 3 retrocopies
retro_pvam_1299, retro_pvam_1396, retro_pvam_45 ,
Rattus norvegicus ENSRNOG000000097791 retrocopy



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