RetrogeneDB ID: | retro_cpor_1269 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_61:6824398..6825368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002615 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.29 % |
Parental protein coverage: | 69.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 10 |
Parental | MSIRVTQKSYK-VSTSGP-RAFSSRSYTSG-PGSRISSSGFSRVGSSSSFRGGVGLGGYGGAGGVGGITA |
MS.RV.QKS.K.VSTS.P...FSS..YT.G..GS.ISSS..S...SSS.F..G.GLG.YGGAG..G.I.A | |
Retrocopy | MSMRVMQKSSK<VSTSSP<HTFSSLQYTGG<SGSPISSSSISQMSSSSPFQDGPGLGSYGGAGSEGNIAA |
Parental | VQVNQSLLN-PLNLEVD-PNIQAVRIQEKEQIKNLNNKFASFIDKVRFLEQQNK-MLETKWSLLQ--QQK |
.QVNQSLL..PLNLEVD.PNI.A.......Q.....NKF.S.I.K...L.Q.N...LETKWSL.Q..QQ. | |
Retrocopy | IQVNQSLLH<PLNLEVD>PNIHAHSGERADQ--KPHNKFTSLIAKLWCLAQLNE<VLETKWSLQQPPQQQ |
Parental | TSRSNMDNMFESYIN-NLRRQLDTL-GQEKLKLEAELGNMQGMVEDFKNKYEDEINKRTEMENEFVLIKK |
TS..NM....ES..N.....QLDTL.G...L..E...G.M.G.V.D.K.K...E.NKRTE.EN.FVLIKK | |
Retrocopy | TSEGNMAHRLESCVN<RSQCQLDTL<GKGELEVE--VGSM*GLV*DLKSKCKGERNKRTEAENQFVLIKK |
Parental | DVDEAYM-NKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDLDGIIAEVKAQY |
D..EAY..NK..LES.LEGLTDE.N.L.QLYEE...EL.SQI.D.S..L..D.S.SL.L.G...EV..Q. | |
Retrocopy | DANEAYV<NKAGLESHLEGLTDETNSLTQLYEEQVPELLSQIPDPSGLLALDESCSLGLYGMVTEVNVQH |
Parental | EEIANRSRAEAES-MYQIKYEELQTLAGKHGDDLRRTKSEISEMNRSISRLQAEIEALKG |
.EIA..S.AEA.S...Q..YEELQTLAG.H.DDLR..KSEISEMN..............G | |
Retrocopy | QEIASHSQAEAKS<L*QTRYEELQTLAGTHRDDLRGMKSEISEMNIGCCQMRLRPSKARG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 147 .71 RPM |
SRP017611_liver | 0 .00 RPM | 168 .80 RPM |
SRP040447_lung | 0 .00 RPM | 155 .44 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .90 RPM |