RetrogeneDB ID: | retro_mmul_1753 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:24601551..24602436(+) | ||
Located in intron of: | ENSMMUG00000019364 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 80.34 % |
Parental protein coverage: | 60.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ENEFVLIKKDVDEAYMNKVELE-SRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDS |
ENEFVLIKK.VD.AYMNKVELE.SRLEG...EIN.LRQLYEEEIRELQSQISDTSVVLSMDNS.SLDMDS | |
Retrocopy | ENEFVLIKKHVDKAYMNKVELEESRLEGQNNEINLLRQLYEEEIRELQSQISDTSVVLSMDNSCSLDMDS |
Parental | IIAEVKAQYEEIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQR |
I.AEVKAQY.EI.NRS.A.AES..Q.KYEELQ.LAGKH.DDL..TKTEISEMN.NI..LQ.E.EGLKGQR | |
Retrocopy | ITAEVKAQYKEITNRSQAGAESLHQVKYEELQALAGKHRDDLHHTKTEISEMNQNIGWLQTETEGLKGQR |
Parental | ASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGE |
.SLEA.I.DAEQ.GELAIKDANAKLSELEA.LQ.A.QDMA.QL.EY.ELM..K.ALDI.I.TYRK.LEGE | |
Retrocopy | VSLEATIVDAEQHGELAIKDANAKLSELEATLQWAMQDMAQQLHEYEELMIIKPALDIKIVTYRKVLEGE |
Parental | ESRLESGMQNMSIHTKTTSGYAGGLSSAYGGLTSPGLSYGLGSSFGSGAGSSSFSRTSSSRAVVVKKIET |
ESRLESGMQN.SIH.KTTSGY.G.LSSAYGGLT.PGLSY.LGSSFGSG..SSSFS.T.S..A.VVKKIE. | |
Retrocopy | ESRLESGMQNVSIHMKTTSGYSGELSSAYGGLTNPGLSYSLGSSFGSGGCSSSFSGTNSFGAMVVKKIEI |
Parental | RDGKLVSESSDVLPK |
.D.KLVSESSDVL.K | |
Retrocopy | HDRKLVSESSDVLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .13 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3433 |
Gorilla gorilla | retro_ggor_2320 |
Pongo abelii | retro_pabe_2842 |