RetrogeneDB ID:

retro_ggor_809

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:67107906..67108813(+)
Located in intron of:ENSGGOG00000012583
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KRT8
Ensembl ID:ENSGGOG00000014673
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_809
TTCTCTGTTCCTTCTCGAATCTCTGCCTAGCTCAGCCTGCCTGCCTTCACTCCTGCCTCCACCATGTCCATCAGAGTGAC
CCAGAAGTCCTTCAAGGTGTCCAACTCTGGCCCAAGGGCCTTCAGTAGCCATTCCTACATGTGTGGGCCCAGTGCCTGCA
TCAGCTCCTCGAGCTTCTCCCCAATGGGCAGCAGCAGCTTCCGGGGTAGCCTGGGTGGAGACTTTGGCAGGGCCAGTGGT
ATGGGAGGCATCACCCCAGTCACGGTCAGCCAGAGCCTGCTGAGCCCCCTTAACCTGGAGGTGGACCCCAACATCCAAGC
TGTGTGCACCCAGGTGAAGGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATTGACAAGGTACAGTTCCTGC
AGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGGCCCCTGCAGCGGCAGAAGATGGCTCAGCGCAACATGGACAACATG
TTCGAGAGCTACATCAACAAACTTCTGCTAGCAGCTGCACAGTCTGGGCCAAGAGAAGCTGAAGCTGGAGGTGGAGCTTG
ATAACATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTATGAGGATGATATCAAAAAGCATACAGAGATGGAGAATGAA
TTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACAAGAACAAGGTAGAGCTGGAGTCTTGCCTGGAAGGGCTTACTGA
AGAGATCAACTTCCTCAGGCAACTGTATGAAGAGGAGATCCGGGAGCTGCAGTCCCAGATCTCGGGCACATCTGTGGTGC
TGTCCATTGACAACAGTCGCTCCCTGGACATGAACAGCATCATCGCTGAGGTCAAGGCACAGTACGAGGAGATCGCCAAC
CACAACCAGGCTGAGGCTGAGAGCATG

ORF - retro_ggor_809 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.85 %
Parental protein coverage: 59.92 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalFSAPSRISAWFGPPASTPASTMSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISSSSFSRVGSSSFRSG
FS.PSRISA....PA.TPASTMSIRVTQKS.KVS.SGPRAFSS.SY..GP...ISSSSFS..GSSSFR..
RetrocopyFSVPSRISA*LSLPAFTPASTMSIRVTQKSFKVSNSGPRAFSSHSYMCGPSACISSSSFSPMGSSSFRGS
ParentalLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKML
LGG..G.ASGMGGIT.VTV.QSLLSPL.LEVDPNIQAV.TQ.KEQIKTLNNKFASFIDKV.FL.QQNKML
RetrocopyLGGDFGRASGMGGITPVTVSQSLLSPLNLEVDPNIQAVCTQVKEQIKTLNNKFASFIDKVQFLQQQNKML
ParentalETKWSLLQQQKTARSNMDNMFESYINNLRR-QLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTE
ETKW..LQ.QK.A..NMDNMFESYIN.L...QL..LGQEKLKLE.EL.NMQGLVEDFKNKYED.I.K.TE
RetrocopyETKWRPLQRQKMAQRNMDNMFESYINKLLL>QLHSLGQEKLKLEVELDNMQGLVEDFKNKYEDDIKKHTE
ParentalMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDS
MENEFVLIKKDVDEAY.NKVELES.LEGLT.EINFLRQLYEEEIRELQSQIS.TSVVLS.DNSRSLDM.S
RetrocopyMENEFVLIKKDVDEAYKNKVELESCLEGLTEEINFLRQLYEEEIRELQSQISGTSVVLSIDNSRSLDMNS
ParentalIIAEVKAQYEDIANRSRAEAESM
IIAEVKAQYE.IAN...AEAESM
RetrocopyIIAEVKAQYEEIANHNQAEAESM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .14 RPM 0 .19 RPM
SRP007412_cerebellum 0 .35 RPM 0 .24 RPM
SRP007412_heart 0 .03 RPM 4 .97 RPM
SRP007412_kidney 0 .12 RPM 51 .36 RPM
SRP007412_liver 0 .00 RPM 137 .80 RPM
SRP007412_testis 0 .41 RPM 4 .97 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_809 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_809 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1024
Macaca mulatta retro_mmul_816

Parental genes homology:
Parental genes homology involve 16 parental genes, and 151 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000071992 retrocopies
Callithrix jacchus ENSCJAG000000181473 retrocopies
Cavia porcellus ENSCPOG000000026155 retrocopies
Dasypus novemcinctus ENSDNOG000000074003 retrocopies
Felis catus ENSFCAG000000002982 retrocopies
Homo sapiens ENSG0000017042128 retrocopies
Gorilla gorilla ENSGGOG00000014673 18 retrocopies
Macaca mulatta ENSMMUG0000000216322 retrocopies
Mustela putorius furoENSMPUG000000064417 retrocopies
Mus musculus ENSMUSG000000493821 retrocopy
Nomascus leucogenys ENSNLEG000000177338 retrocopies
Oryctolagus cuniculus ENSOCUG000000069451 retrocopy
Otolemur garnettii ENSOGAG0000001174016 retrocopies
Pongo abelii ENSPPYG0000000456231 retrocopies
Pteropus vampyrus ENSPVAG000000093603 retrocopies
Rattus norvegicus ENSRNOG000000097791 retrocopy



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