RetrogeneDB ID: | retro_mmul_1810 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:159375290..159376153(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 81.51 % |
Parental protein coverage: | 59.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGARISSSSFSRVGSSSF-RGGLGGGYGGASGMGGITAVTVN |
MS.RVTQKSYKVSTSGP.AFSS.SY.SGP.A.I.SSSFS.VGSSSF...G.GGGYGGAS.MG.ITAV.VN | |
Retrocopy | MSVRVTQKSYKVSTSGPLAFSSCSYMSGPSAHITSSSFSQVGSSSF>GSGPGGGYGGASSMGSITAVMVN |
Parental | QSLLSPLNLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLL-QQQKTARSNMDN |
QSLLS.L.LEVDPN.QA.RT.EKE.IKTLN.KFASFIDKV.FLEQQNKMLETKWSL....QK.ARSNMDN | |
Retrocopy | QSLLSSLDLEVDPNVQAMRTKEKEYIKTLN-KFASFIDKVQFLEQQNKMLETKWSLR<KHQKMARSNMDN |
Parental | MFESYINNLRRQLETLGQEKL-KLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNK |
MF.SYINN.R.Q..T.GQEKL..LEAELGNMQ.LVEDFKNKY.DEINK.T.MENEFVLIKKD.D.AYMN. | |
Retrocopy | MFKSYINNPRQQPDTVGQEKL<ELEAELGNMQRLVEDFKNKYKDEINKHTDMENEFVLIKKDMDDAYMNQ |
Parental | VELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEEIANRSRAE |
VELES.LEGLTDEINFLRQLYEEEI.ELQSQISDTSVVLSMDNS.SLD.DSIIAEVK...EEIAN.S.AE | |
Retrocopy | VELESHLEGLTDEINFLRQLYEEEIQELQSQISDTSVVLSMDNSHSLDTDSIIAEVKVR*EEIANYSHAE |
Parental | AESMYQIKYEEL |
AESMYQIKY..L | |
Retrocopy | AESMYQIKYANL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .06 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .04 RPM | 0 .94 RPM |